1. May 2009 ChemAxon - What’s New?

2. What’s new and hot? All products have seen enhancements in the past 12 months BUT WHAT’S REALLY HOT?

3. The All New Product Map

4. The hottest of the hot - Instant JChem - Markush - Web Services - Metabolizer - Name to Structure - JChem for Excel

5. JChem family JChem BaseJChem CartridgeInstant JChemJChem for Excel API for structure searching and database handling Tight Oracle SQL integration Desktop application for scientist Marvin and JChem functionality Available from Java,.NET and Web services SQL functions for chemistry Access local and remote databases Excel functions, sorting, filtering, charge etc…

6. Instant JChem Desktop application for local and remote chemical database management, search and structure based predictions Simply connect to external databases and share your native database simultaneously Powerful search functionalities Scalable – explore large datasets (10 6 +) Dynamically predict properties using Calculator Plugins Apply canonicalization rules for import and viewing Wide import / export options Merge data sets into a single set Instant JChem: http://www.chemaxon.com/conf/Instant_JChem.ppt

7. Instant JChem – What’s New – Support for JChem Oracle cartridge (remote databases) – Improved file import and export – Improved display and printing Coming soon – IJC Server (3 tier architecture) – URL fields – Schema editor improvement – Reactor integration – finer grain security

8. Searching in Markush structures Combinatorial Markush structure registration and search features handled in search and enumeration –R-groups (nesting to any depth) –Atom lists, bond lists –Position variation bond –Link nodes and repeating units –Homology groups Compatible Markush enumeration plugin Markush Search: http://www.chemaxon.com/product/markush_search.html http://www.chemaxon.com/product/markush_search.html

9. Markush – What’s New –Import modules for Markush file formats –Homology groups built-in homology groups user defined homology groups –Import from reagent files az R-groups Coming Soon –More homology groups –Import modules for Markush file formats –Further improvements of homology variation –Properties (# of atoms, branching points, # of heteroatoms, etc.) –Multiple graphical attachment points of R-groups –Overlap analysis

10. JChem Web Services: http://www.chemaxon.com/ajax/ http://www.chemaxon.com/ajax/ JChem Web Services Server Web Services integration of JChem functionality JChem Search Molecular Conversion Standardizer Chemical Terms Enables web application development without Java language, including AJAX, Python, Perl Standalone server that only needs Java runtime chainable with other web services Easy to install and deploy

11. Metabolizer Metabolic stability and metabolically sensitive groups Can be customized by various biotransformation libraries Virtual biotransformation-based metabolite enumeration tool Xenobiotic metabolic pathways prediction Major metabolite prediction

12. Metabolizer – What’s Next –Human xenobiotic phase one CYP450 biotransformation library –Biotransformation library optimizer

13. Chemical Naming Structure to Name/ Name to structure Supported nomenclatures : –Chains, Monocycles/ Traditional names with and without heteroatom/ Spiro ring systems/ Ethers/ Common characteristic groups, Ionic compounds/ Unlimited number of atoms and rings/ All atom types /Stereochemistry/ etc. Usage: –drag&drop or copy&paste to MarvinSketch –Label updated in real-time –Automatic format recognition –Batch from command line –Name to structure conversion of documents –www.chemicalize.orgwww.chemicalize.org Chemicalize the Web: http://www.chemicalize.org/ http://www.chemicalize.org/

14. JChem for Excel Microsoft Excel integrated solution for Marvin and JChem functionality Use Excel’s powerful features: Functions, Sorting, Filtering, Charts… Implemented in C#.NET, and Visual Studio (no Java!) Live chemical structures Easy to install and deploy Feature rich –structure searching –chemistry functions (predictions) –R-group decomposition –virtual reactions –standardization –clustering UNDER DEVELOPMENT

15. Visit other technical presentations MarvinSketch/View http://www.chemaxon.com/MarvinSketch_View.ppt http://www.chemaxon.com/MarvinSketch_View.ppt MarvinSpace http://www.chemaxon.com/MarvinSpace.ppt http://www.chemaxon.com/MarvinSpace.ppt Calculator Plugins http://www.chemaxon.com/Calculator_Plugins.ppthttp://www.chemaxon.com/Calculator_Plugins.ppt Chemical Naming http://www.chemaxon.com/conf/Naming.ppt http://www.chemaxon.com/conf/Naming.ppt Structural Search http://www.chemaxon.com/Structural_Search.ppthttp://www.chemaxon.com/Structural_Search.ppt JChem Base http://www.chemaxon.com/JChem_Base.ppt http://www.chemaxon.com/JChem_Base.ppt Markush Search http://www.chemaxon.com/conf/Markush_development.ppt http://www.chemaxon.com/conf/Markush_development.ppt Instant JChem http://www.chemaxon.com/conf/Instant_JChem.ppthttp://www.chemaxon.com/conf/Instant_JChem.ppt JChem Cartridge http://www.chemaxon.com/JChem_Cartridge.ppt http://www.chemaxon.com/JChem_Cartridge.ppt Standardizer http://www.chemaxon.com/Standardizer.ppt http://www.chemaxon.com/Standardizer.ppt Screen http://www.chemaxon.com/Screen.ppt http://www.chemaxon.com/Screen.ppt JKlustor http://www.chemaxon.com/JKlustor.ppt http://www.chemaxon.com/JKlustor.ppt Fragmenter http://www.chemaxon.com/Fragmenter.ppt http://www.chemaxon.com/Fragmenter.ppt Reactor http://www.chemaxon.com/Reactor.ppt http://www.chemaxon.com/Reactor.ppt

16. Find out more Product descriptions & links www.chemaxon.com/products.html Forum www.chemaxon.com/forum Presentations and posters www.chemaxon.com/conf Download www.jchem.com/licensefrset.html