1. I.Evolution II.Darwin and Selection

2. A. Transitional Observations 1. ‘Artificial Selection’ and Domesticated Animals and Plants

3. A. Transitional Observations 1. ‘Artificial Selection’ and Domesticated Animals and Plants

4. A. Transitional Observations 1. ‘Artificial Selection’ and Domesticated Animals and Plants

5. A. Transitional Observations 1. ‘Artificial Selection’ and Domesticated Animals and Plants

6. A. Transitional Observations 1. ‘Artificial Selection’ and Domesticated Animals and Plants

7. A. Transitional Observations 1. ‘Artificial Selection’ and Domesticated Animals and Plants

8. Selection can create phenotypes beyond the initial range of expression.. There are no adult wolves as small as chihuahuas. A. Transitional Observations 1. ‘Artificial Selection’ and Domesticated Animals and Plants

9. “In October 1838, that is, fifteen months after I had begun my systematic enquiry, I happened to read for amusement Malthus on Population…” - The Autobiography of Charles Darwin 1809-1882 (Barlow 1958). A. Transitional Observations 1. ‘Artificial Selection’ and Domesticated Animals and Plants 2. Reading Malthus

10. Thomas Malthus (1766-1834) Essay On the Principle of Population (1798) A. Transitional Observations 1. ‘Artificial Selection’ and Domesticated Animals and Plants 2. Reading Malthus

11. Thomas Malthus (1766-1834) Essay On the Principle of Population (1798) P1: All populations have the capacity to ‘over- reproduce’ P2: Resources are finite C: There will be a “struggle for existence”… most offspring born will die before reaching reproductive age. A. Transitional Observations 1. ‘Artificial Selection’ and Domesticated Animals and Plants 2. Reading Malthus

12. “In October 1838, that is, fifteen months after I had begun my systematic enquiry, I happened to read for amusement Malthus on Population and being well prepared to appreciate the struggle for existence which everywhere goes on from long-continued observation of the habits of animals and plants, it at once struck me that under these circumstances favourable variations would tend to be preserved, and unfavourable ones to be destroyed. The result of this would be the formation of new species. Here, then, I had at last got a theory by which to work; but I was so anxious to avoid prejudice, that I determined not for some time to write even the briefest sketch of it. In June 1842 I first allowed myself the satisfaction of writing a very brief abstract of my theory in pencil in 35 pages; and this was enlarged during the summer of 1844 into one of 230 pages, which I had fairly copied out and still possess.” - The Autobiography of Charles Darwin 1809-1882 (Barlow 1958). A. Transitional Observations 1. ‘Artificial Selection’ and Domesticated Animals and Plants 2. Reading Malthus

13. B. Natural Selection P1: All populations have the capacity to ‘over-reproduce’ P2: Resources are finite C: There will be a “struggle for existence”… most offspring born will die before reaching reproductive age. P3: Organisms in a population vary, and some of this variation is heritable C2: As a result of this variation, some organisms will be more likely to survive and reproduce than others – there will be differential reproductive success. C3: The population change through time, as adaptive traits accumulate in the population. Corollary: Two populations, isolated in different environments, will diverge from one another as they adapt to their own environments. Eventually, these populations may become so different from one another that they are different species.

14. B. Natural Selection "It is interesting to contemplate an entangled bank, clothed with many plants of many kinds, with birds singing on the bushes, with various insects flitting about, and with worms crawling through the damp earth, and to reflect that these elaborately constructed forms, so different from each other, and dependent on each other in so complex a manner, have all been produced by laws acting around us. These laws, taken in the largest sense, being Growth with Reproduction; Inheritance which is almost implied by reproduction; Variability from the indirect and direct action of the external conditions of life, and from use and disuse; a Ratio of Increase so high as to lead to a Struggle for Life, and as a consequence to Natural Selection, entailing Divergence of Character and the Extinction of less-improved forms. Thus, from the war of nature, from famine and death, the most exalted object which we are capable of conceiving, namely, the production of the higher animals, directly follows. There is grandeur in this view of life, with its several powers, having been originally breathed into a few forms or into one; and that, whilst this planet has gone cycling on according to the fixed law of gravity, from so simple a beginning endless forms most beautiful and most wonderful have been, and are being, evolved". - The Origin of Species (Darwin 1859).

15. III. Natural Selection A.The Nature of Selection - Types of Selection

16. III. Natural Selection A.The Nature of Selection - Types of Selection Stabilizing selection for size at birth in humans

17. III. Natural Selection A.The Nature of Selection - Types of Selection Directional selection for beak size

18. III. Natural Selection A.The Nature of Selection - Types of Selection Disruptive selection for beak width in African finches feeding on two species of sedges with soft and hard seeds.

19. Can result in sympatric speciation – speciation within a reproducing population, in which different subpopulations become adapted to different niches in the same environment and produce poorly adapted hybrids when they breed with other subpopulations.

20. III. Natural Selection A.The Nature of Selection - Modes of Selection Natural Selection Sexual Selection: fitness of a genotype/trait depends on organism’s sex

21. III. Natural Selection A.The Nature of Selection - Modes of Selection Natural Selection Sexual Selection: fitness of a genotype/trait depends on sex Kin Selection: fitness depends on relatedness within group

22. III. Natural Selection A.The Nature of Selection - Modes of Selection Natural Selection Sexual Selection: fitness of a genotype/trait depends on sex Kin Selection: fitness depends on relatedness within group Frequency-dependent Selection: fitness depends on genotype frequency Papilio memnon females have many possible phenotypes that mimic toxic species. Abundant morphs are selected against; because bird predators learn they are tasty and prey on them. Negative frequency dependence.

23. III. Natural Selection A.The Nature of Selection - Modes of Selection Natural Selection Sexual Selection: fitness of a genotype/trait depends on sex Kin Selection: fitness depends on relatedness within group Frequency-dependent Selection: fitness depends on genotype frequency Heliconius erato is a toxic species in Central America. Whichever morph becomes more abundant (even by chance) becomes EVEN MORE abundant because birds learn to avoid it more readily. Positive frequency dependence.

24. III. Natural Selection A.The Nature of Selection - Modes of Selection Natural Selection Sexual Selection: fitness of a genotype/trait depends on sex Kin Selection: fitness depends on relatedness within group Frequency-dependent Selection: fitness depends on genotype frequency Female guppies prefer to mate with the rarest male phenotype; selects for polymorphism over time.

25. III. Natural Selection A.The Nature of Selection - Modes of Selection Natural Selection Sexual Selection: fitness of a genotype/trait depends on sex Kin Selection: fitness depends on relatedness within group Frequency-dependent Selection: fitness depends on genotype frequency Artificial Selection

26. III. Natural Selection A.The Nature of Selection B. Testing for Selection/Adaptation 1. Phenotypic Plasticity Why do populations differ? 1)Genetic adaptation 2)Evolutionary diverge due to other agents of change 3)Phenotypic plasticity – the direct effect of environment on phenotype

27. Daphnia grow spines and head-spines when developing in the presence of fish (predators) Gastrimargus grasshoppers developing in different seasons (with predictable sustrate colors) develop into different colored nymphs and adults

28. III. Natural Selection A.The Nature of Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

29. So, suppose we observe variation in plant size among genetically different plants growing in a field: This variation in phenotype might be due to a combination of genetic and environmental differences between them. V(phen) = V(env) + V(gen) III. Natural Selection A.The Nature of Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

30. IF these plants were all grown under the same environmental conditions (‘common garden’ experiment), then there is no variation in the environment and the variation we observe can be attributed to genetic differences. V(phen) = 0 + V(gen) III. Natural Selection A.The Nature of Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment? (whether these genetic differences are ADAPTIVE is another question…)

31. IF these plants were all grown under the same environmental conditions (‘common garden’ experiment), then there is no variation in the environment and the variation we observe can be attributed to genetic differences. V(phen) = 0 + V(gen) IIi. Natural Selection A.The Nature of Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment? (But this is only true for this environment!)

32. In a different environment, phenotypic and genetic variation may be expressed differently. III. Natural Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

33. So, in a large population experiencing a range of environments: V(phen) = V(env) + V(gen) + V(g*e) V(g*e) is a genotype by environment interaction; reflecting the fact that genotypes may respond in different ways to changes in the environment. III. Natural Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

34. Height Environment Suppose we had populations of each genotype, and these were the mean heights of these populations. StanfordMather Genotype C F III. Natural Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

35. Height Environment Suppose we had populations of each genotype, and these were the mean heights of these populations. StanfordMather Genotype C F XSXS XMXM V(env) III. Natural Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

36. Height Environment Suppose we had populations of each genotype, and these were the mean heights of these populations. StanfordMather Genotype C F XCXC XFXF V(gen) III. Natural Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

37. Height Environment Suppose we had populations of each genotype, and these were the mean heights of these populations. StanfordMather Genotype C F X CS X CM X FS X FM = The effect of environment IS THE SAME for the two genotypes: (g*e) = 0. III. Natural Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

38. So, in this comparison: V(phen) = V(env) + V(gen) + V(g*e) Sig.Sig.ns III. Natural Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

39. Height Environment Suppose we compare B and E. StanfordMather Genotype B E III. Natural Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

40. Height Environment Environmental effects are significant StanfordMather Genotype B E XSXS XMXM V(env) III. Natural Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

41. Height Environment Genetic effects are insignificant; means don’t differ. StanfordMather Genotype B E XCXC XEXE V(gen) = 0 III. Natural Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

42. Height Environment There is a significant ‘G x E’ interaction. StanfordMather Genotype B E X CS X CM X FS X FM >> The effect of environment IS NOT THE SAME for the two genotypes!! III. Natural Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

43. In a different environment, phenotypic and genetic variation may be expressed differently. So, in this comparison: V(phen) = V(env) + V(gen) + V(g*e) Sig.nsSig. III. Natural Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment?

44. We should expect adaptations to specific environmental conditions to be reflected by such “genotype by environment” interactions in characters that affect reproductive success.

45. III. Natural Selection A.The Nature of Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment? 3.Selection for Acclimation Ability

46. III. Natural Selection A.The Nature of Selection B. Testing for Selection/Adaptation 1.Phenotypic Plasticity 2.Genetics, environment, or genetic adaptation to environment? 3.Selection for Acclimation Ability Raised at 20 o C Raised at 45 o C