1. Campus Bridging: What is it and why is it important? Barbara Hallock – Senior Systems Analyst, Campus Bridging and Research Infrastructure

2. Campus Bridging: basic definitions “Bridging” the gap between local researcher cyberinfrastructure, campus CI, and national CI resources – Hardware – Software – Support – Outreach

3. Based on: Welch, V.; Sheppard, R.; Lingwall, M.J.; Stewart, C. A. 2011. Current structure and past history of US cyberinfrastructure (data set and figures). hdl.handle.net/2022/13136

4. Adequacy of research CI Stewart, C.A., D.S. Katz, D.L. Hart, D. Lantrip, D.S. McCaulay and R.L. Moore. Technical Report: Survey of cyberinfrastructure needs and interests of NSF-funded principal investigators. 2011. hdl.handle.net/2022/9917 Responses to asking if researchers had sufficient access to cyberinfrastructure resources – survey sent to 5,000 researchers selected randomly from 34,623 researchers funded by NSF as Principal Investigators 2005-2009; results based on 1,028 responses

5. More on Campus Bridging The goal of campus bridging is virtual proximity … The biggest problems: – Not enough CI resources available to most researchers – When you go from your campus to the national cyberinfrastructure it can feel like you are falling off a cliff! That’s why you need bridging…. IU is collaborating with institutions around the country, including the National Center for Supercomputing Applications (NCSA), San Diego Supercomputer Center (SDSC), Pittsburgh Supercomputing Center (PSC), and others in the eXtreme Science and Engineering Discovery Environment (XSEDE) Campus bridging is a major priority within XSEDE

6. XSEDE – Part 1 XSEDE is a project, an institution, and a set of services. – As a project, XSEDE is a five-year, $121 million grant award made by the National Science Foundation (NSF) to the National Center for Supercomputing Applications (NCSA) at the University of Illinois and its partners via program solicitation NSF 08-571. – XSEDE is a successor to the NSF-funded TeraGrid project – As an institution, XSEDE is a collaboration led by NCSA and 18 partner organizations to deliver a series of instantiations of services, each instantiation being developed through a formal systems engineering process. – As a set of services, XSEDE integrates supercomputers, visualization and data analysis resources, data collections, and software into a single virtual system for enhancing the productivity of scientists, engineers, social scientists, and humanities experts.

7. XSEDE part 2 Under TeraGrid, it was never possible to buy “TeraGrid-like” cycles, and many people viewed the allocation process as very slow XSEDE is speeding up the allocation process considerably IU is working with Penguin Computing to install the basic open source XSEDE software environment on the Rockhopper cluster It is for the first time ever possible to buy “XSEDE-like” cycles in a matter of minutes using a credit card In some circumstances this will be a much better way to meet peak needs, or use startup funds, than buying and installing “clusters in a closet.”

8. XSEDE Part 3 IU is leading, with University of Virginia, a beta test for the GenesisII software, which will allow users to interact with XSEDE resources using an interface which will be consistent with the resources they will be able to access locally at their campuses Will allow execution of jobs across multiple resources, managed from a single, consistent interface Two components – Execution Management Services (EMS) Standardizes job submission via JSDL – Global Federated File System (GFFS) Standardizes user interface across CI resources

9. NCGAS The National Center for Genome Analysis Support A Cyberinfrastructure Service Center affiliated with the Indiana University Pervasive Technology Institute (pti.iu.edu) Dedicated to supporting life science researchers who need computational support for genomics analysis Initially funded by the National Science Foundation Advances in Biological Informatics (ABI) program, grant # 1062432 Provides access to genomics analysis software on supercomputers customized for genomics studies including POD IU Particularly focused on supporting genome assembly codes such as: – de Bruijn graph methods: SOAPdeNovo, Velvet, ABySS, – Consensus methods: Celera, Newbler, Arachne 2 For more information, see ncgas.org

10. Summary Campus bridging aims to create virtual proximity between researchers and resources Streamlining and easing the analysis part of research via – Hardware – Software – Support – Outreach Examples – GenesisII – National Center for Genome Analysis Support – XSEDE collaboration

11. For more information… podiu.penguincomputing.com pti.iu.edu/ci/systems/rockhopper

12. License terms Please cite this presentation as: B. Hallock. Campus bridging: What is it and why is it important? 2013. Presentation. http://hdl.handle.net/2022/15431http://hdl.handle.net/2022/15431 Portions of this document that originated from sources outside IU are shown here and used by permission or under licenses indicated within this document. Items indicated with a © are under copyright and used here with permission. Such items may not be reused without permission from the holder of copyright except where license terms noted on a slide permit reuse. Except where otherwise noted, the contents of this presentation are copyright 2011 by the Trustees of Indiana University. This content is released under the Creative Commons Attribution 3.0 Unported license (creativecommons.org/licenses/by/3.0). This license includes the following terms: You are free to share – to copy, distribute and transmit the work and to remix – to adapt the work under the following conditions: attribution – you must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). For any reuse or distribution, you must make clear to others the license terms of this work.

13. Thanks Penguin Computing, Inc. for their willingness to forge new paths with IU Staff of the Research Technologies division of University Information Technology Services, affiliated with the Pervasive Technology Institute, who were involved in the implementation of Rockhopper: George Turner, Robert Henschel, David Y. Hancock, Matthew R. Link, Richard Knepper Those involved in campus bridging activities: Guy Almes, Von Welch, Patrick Dreher, Jim Pepin, Dave Jent, Stan Ahalt, Bill Barnett, Therese Miller, Malinda Husk, Maria Morris, Gabrielle Allen, Jennifer Schopf, Ed Seidel All of the IU Research Technologies and Pervasive Technology Institute staff who have contributed to the development of IU’s advanced cyberinfrastructure and its support NSF for funding support (Awards 040777, 1059812, 0948142, 1002526, 0829462, 1062432, OCI-1053575 – which supports the Extreme Science and Engineering Discovery Environment)0407771059812094814210025260829462 Lilly Endowment, Inc. and the Indiana University Pervasive Technology Institute Any opinions presented here are those of the presenter and do not necessarily represent the opinions of the National Science Foundation or any other funding agencies