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GIS at SDSC Domains: –From geology, environmental science, hydrology, ocean biodiversity, regional development, Katrina response, archaeology, to neuroscience.

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Presentation on theme: "GIS at SDSC Domains: –From geology, environmental science, hydrology, ocean biodiversity, regional development, Katrina response, archaeology, to neuroscience."— Presentation transcript:

1 GIS at SDSC Domains: –From geology, environmental science, hydrology, ocean biodiversity, regional development, Katrina response, archaeology, to neuroscience and ophthalmology. All levels of infrastructure: –Spatial databases (Oracle, MySQL, Postgres/PostGIS, ArcSDE) –Spatial servers (ArcGIS Server, ArcIMS, WMS/WFS servers) –Spatial web services, incl. spatial information integration –Client applications: COTS, open source, mashups, in-house Novel approaches: –Map assembly services –Ontology-aware spatial query processing –Distributed spatial data querying using mediators –Wrappers for spatial data sources of different type –XML-based vector mapping –Portal integration –SOA integration, sensor data management –Long-term spatial data preservation Collaborations: –Industrial partners (ESRI), associations (OGC), government agencies (USGS, EPA, NCDC, etc.) GIS-related funding: NSF, NIH, NIEHS, NARA, ESRI Classes and short courses taught: from archaeology to medical sciences

2 WaterOneFlow Web Services Data accessthrough web services Data storage through web services Downloads Uploads Observatory servers Workgroup HIS SDSC HIS servers 3 rd party servers e.g. USGS, NCDC GIS Matlab IDL Splus, R D2K, I2K Programming (Fortran, C, VB) Web services interface DASH: Data Access System for Hydrology Information input, display, query and output services Preliminary data exploration and discovery. See what is available and perform exploratory analyses HTML -XML WSDL - SOAP Hydrologic Information System Service Oriented Architecture

3 DASH AGS Server IIS Windows 2003 Server 4 GB Ram 1 TB Disk Quad Core CPU SQL Server VS 2005 WaterOneFlow Web Services ArcGIS 9.2 GIS Data Mxd Service ODM LoaderODM tools ODM Workgroup HIS Server: Current Deployment Architecture Direct DB connection The servers are configured at SDSC with GIS software and databases, and shipped to WATERS test bed sites

4 Spatial Queries on Brain Structures, including 3D queries The Smart Atlas: Spatial Integration over Distributed Data WebStart from BIRN portal

5 Spatial integration of distributed multiscale data The new version of the S.M.A.R.T. Brain Atlas is a MapObjects-Java based Web application for ontology- aware discovery and integration of distributed multiscale brain data registered to the common stereotaxic coordinate system.

6 Spatial sources and requests 1: getSources ({slice_plane_params, 2Dshape}, sp_rel) 2: getFragment(URI,plane_params,2Dshape,image_dims) BIRN-CC infrastructure

7 Impact

8 ESRI Health Sciences Brochure Presented at several GIS conferences: keynote at International Health GIS, 2004; Part of ESRI’s President’s address at GIS User Conference (2003), other…

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10 The STARE (Structural Analysis of the Retina) project, UCSD Foveal Coordinate System Background Coordinate System Veins Arteries Optic nerve Fovea Cotton-Wool Hemorrhages

11 Drinking water surface intakes and TRI facilities Now at: http://www-apps.niehs.nih.gov/katrina/ NIEHS Hurricane Katrina Response Portal

12 Data download and metadata are available for all spatial layers

13 Infrastructure and Architecture: Overview User Interface Grid Middleware / Cyberinfrastructure Physical Resources and Data Grid Middleware/Cyberinfrastructure Provides Security, Identity Mapping, and Resource Access/Abstraction Between Shared Resources Within and Between Virtual Organizations

14 SAN DIEGO SUPERCOMPUTER CENTER, UCSD SciR&D SDSC Spatial Information Systems Lab Research and system development Services-based spatial information integration infrastructure Mediation services for spatial data, query processing, map assembly services Long-term spatial data preservation Spatial data standards and technologies for online mapping (SVG, WMS/WFS) Support of spatial data projects at SDSC and beyond services In Geosciences (GEON, CUAHSI, CBEO,…) In regional development (NIEHS SBRP, Katrina) In Neurosciences (BIRN, CCDB)


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