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Modularity as an Organizing Principle in Protein Structure
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Unequal recombination drives the repetition of structural elements TIM barrel muramidase x 300 Titin
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Core of an average domain ~150 AA 20 different amino acids –> 20 150 = 10 200 different sequences Of these ~10 38 are expected to have different fold (i.e. less than 20% sequence identity) Estimated number of naturally occurring folds ~1000 Fraction of theoretically possible “folds” used in nature ~ 1/10 34 = 0.00000000000000000000000000000001%
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Super secondary Structure elements
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Structures with alpha-hairpin motifs
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beta-hairpin Motifs
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beta-alpha-beta Motif
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Proteins with more than 30% AA identity almost always adopt the same fold.
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folded unfolded Stability - G folding Sequence Proteins as “Islands of Stability” in Sequence Space
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Bridges in between islands Cordes et al. Nat. Struct. Biol 2000 Dec;7(12):1129-32.
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Glykos, N.M., Cesareni, G. & Kokkinidis, M. (1999), Structure 7, 597-603
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B1 domain of protein G Janus < 50% of AA changed Paracelsus Challenge
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