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The 7 steps of Homology modeling. 1: Template recognition and initial alignment.

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Presentation on theme: "The 7 steps of Homology modeling. 1: Template recognition and initial alignment."— Presentation transcript:

1 The 7 steps of Homology modeling

2 1: Template recognition and initial alignment

3 2: Alignment correction

4

5 1: Template recognition and initial alignment 2: Alignment correction

6 1: Template recognition and initial alignment 2: Alignment correction 3: Backbone generation

7 1: Template recognition and initial alignment 2: Alignment correction 3: Backbone generation 4: Loop modeling

8 Known structure GVCMYIEA---LDKYACNC Your sequence GECFMVKDLSNPSRYLCKC

9 1: Template recognition and initial alignment 2: Alignment correction 3: Backbone generation 4: Loop modeling 5: Sidechain modeling

10 1: Template recognition and initial alignment 2: Alignment correction 3: Backbone generation 4: Loop modeling 5: Sidechain modeling 6: Model optimization

11 1: Template recognition and initial alignment 2: Alignment correction 3: Backbone generation 4: Loop modeling 5: Sidechain modeling 6: Model optimization 7: Model validation

12 1: Template recognition and initial alignment 2: Alignment correction 3: Backbone generation 4: Loop modeling 5: Sidechain modeling 6: Model optimization 7: Model validation 8: Iteration

13 Model! 1: Template recognition and initial alignment 2: Alignment correction 3: Backbone generation 4: Loop modeling 5: Sidechain modeling 6: Model optimization 7: Model validation 8: Iteration

14 7 steps of homology modeling 1: Template recognition and initial alignment 2: Alignment correction 3: Backbone generation 4: Loop modeling 5: Side-chain modeling 6: Model optimization 7: Model validation 8: Iteration Alignment Modeling Correction


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