1. 6 and 8 November, 2006 Chapter 18 Gene Regulation During Development

2. Overview Differences in cell type are fundamentally differences in gene expression. These expression differences are often monitored using microarray hybridization. Differential gene expression is initiated by asymmetrical mRNA distribution, cell- cell contact, or by diffusible signals. Gradients of signaling molecules can give location information to cells. Asymmetrically distributed mRNAs use the cytoskeleton for localization. Drosophila embryogenesis is a well-understood system of animal development. A morphogen gradient controls dorsal-ventral orientation in Drosophila. Asymmetrically distributed mRNAs control anterior-posterior orientation and ultimately segmentation. Segmentation also depends on the interplay of regulators at the control regions of genes. Bioinformatics tools are useful in identifying genes that are developmentally regulated.

3. Signaling Differentiation

4. Transducing the Signal

5. Regualtion in a Morphogen Gradient

6. Regulation by Asymmetrically Distributed mRNA

8. Polar Cytoskeletal Elements

9. Regulation by Cell-cell contact in B. subtilis

10. Regulation by Cell-cell contact in Animal Development

12. Morphogen Gradient

13. Drosophila Development

14. Spätzle-Toll create a gradient of Dorsal in nuclei.

15. Transcriptional response to the Dorsal Gradient

16. Snail keeps rhomboid off in cells of the mesoderm.

17. Polar Distribution of bicoid and oksar in Drosophila Embryos

18. Bicoid regulates orthodenticle and zygotic hunchback.

19. Maternal hunchback mRNA is evenly distributed, but translationally repressed by the posteriorly concentrated nanos.

20. The hunchback gradient regulates gap genes as a transcriptional repressor.

21. Gap genes direct the expression of pair-rule genes.

23. Bioinformatics and the identification of enhancers.

24. Competition and Quecnching in the eve enhancer

25. Repression of eve-3 and eve-4 enhancers by hunchback and knirps.

26. Enhancer autonomy requires short-range repression.

28. Title