1. MCB 186 CIRCADIAN BIOLOGY Slides Lecture 2 Basic Properties of Circadian Clocks September 27, 2006 J. W. Hastings

2. DEFINITION of TERMS in CIRCADIAN BIOLOGY GLOSSARY on COURSE WEB SITE and in TEXT BOOKS

3. CIRCADIAN RHYTHMS - KEY PROPERTIES (1)RHYTHMS CONTINUE IN THE ABSENCE OF LIGHT/DARK CYCLES WITH PERIODS CLOSE TO BUT NOT EXACTLY 24H exact period length is a function of environmental conditions (2)TEMPERATURE ALSO AFFECTS CIRCADIAN PERIOD BUT MUCH LESS SO THAN FOR TYPICAL BIOCHEMICAL REACTIONS. Cellular compensation is postulated to be responsible (3)PHASE can be RESET by LIGHT: ENTRAINED or SYNCHRONIZED to DAILY LIGHT / DARK or OTHER ENVIRONMENTAL CYCLES resetting does not need cycles: single exposures or pulses suffice

4. RHYTHM IN HUMAN: LD & LL Raster Plots: - Single, double, triple etc. - Modulo tau Tau greater than 24h

5. CIRCADIAN CLOCKS MAY BE VERY PRECISE DECOURSEY, 1961 Activity of squirrel Tau less than 24h

6. PERIOD (Tau) DEPENDS on LIGHT INTENSITY

7. PERIOD (Tau) of CIRCADIAN RHYTHM DEPENDS on PERIOD (T=20) OF PRIOR L/D CYCLE MOUSE PITTENDRIGH & DAAN

8. DRUGS MAY ALSO HAVE an EFFECT ON PERIOD e.g., PROTEIN PHOSPHATASE INHIBITORS

9. TEMPERATURE-COMPENSATED CIRCADIAN PERIOD IN VARIOUS ORGANISMS

10. ENTRAINMENT OCCURS when ORGANISM is EXPOSED TO LIGHT/DARK CYCLES CAN BE CALLED SYNCHRONIZATION

11. HUMAN CIRCADIAN ENTRAINMENT CHANGING PHASE OF L/D CYCLE CHANGES PHASE of RHYTHM

12. ENTRAINMENT by L/D CYCLES in MONKEY DURING a FREE-RUN MOORE-EDE ETAL

13. Schematic depiction of entrainment by light: T constant, Tau changes

14. GONYAULAX ENTRAINMENT by 14 HR LD CYCLES, then DD or LL

15. ENTRAINMENT by DIFFERENT LIGHT/DARK CYCLES and EFFECT of LIGHT INTENSITY on LIMITS of ENTRAINMENT

16. APPARENT ENTRAINMENT by TEMP CYCLE is a DIRECT EFFECT FLYING SQUIRREL DE COURSEY

17. ENTRAINMENT is due to PHASE SHIFTS in CIRCADIAN RHYTHM BUT PHASE SHIFTS do not REQUIRE FULL LIGHT/DARK CYCLES A SINGLE “BRIEF” EXPOSURE TO LIGHT SUFFICES

18. GONYAULAX CELLS IN DD: PHASE SHIFT BY SINGLE LIGHT PULSES ADVANCE OR DELAY DEPENDS ON TIME IN CYCLE CONTROL IN DARK LATE NIGHT PULSE PHASE ADVANCE EARLY NIGHT PULSE PHASE DELAY

19. GONYAULAX LIGHT PHASE RESPONSE CURVE (PRC)

20. GONYAULAX LIGHT PHASE RESPONSE CURVE (the PRC) LIGHT PULSES GIVEN AT TIMES INDICATED TIME 0 is the BEGINNING of NIGHT PHASE DEAD ZONE DAY PHASE

21. HOW DOES ONE DISTINGUISH DELAYS from ADVANCES? GIVE a STRONGER(BRIGHTER) EXPOSURE to LIGHT THIS RESULTS in a GREATER PHASE SHIFT - but in WHICH DIRECTION??

22. GONYAULAX PHASE ADVANCES BY LIGHT PULSES

23. GONYAULAX ACTION SPECTRUM FOR PHASE SHIFTING BY 3 HOUR LIGHT EXPOSURES

24. PHASE RESPONSE CURVE DESCRIBED MOORE-EDE ETAL Black is day phase

25. SCHEMATIC PHASE RESPONSE CURVES (PRCs )

26. PULSES of ANISOMYCIN (protein synthesis inhibitor) CAUSE PHASE SHIFTS in Gonyaulax

27. PHASE SHIFTS BY ANISOMYCIN 0.3  M, 1 HOUR

28. LONG DAYS (LIGHT PERIOD) VERSUS SHORT DAYS LONG DAYS CAUSE BOTH DELAYS and ADVANCES SHORT DAYS ONLY ONE or the OTHER Phase angle (acrophase) differs with day length

29. LONG & SHORT DAY PHASE SHIFTS in an ORGANISM with a CIRCADIAN TAU OF 24.5 hr

30. ENTRAINMENT by T CYCLES with DIFFERENT PHOTOFRACTIONS Short day Long day

31. DROSOPHILA ENTRAINMENT TO FULL LD CYCLES BLACK DOTS INDICATE PEAK TIMES OF ECLOSION PITTENDRIGH

32. SKELETON PHOTOPERIODS TWO LIGHT EXPOSURES (e.g., 15 min, or 1 hr each) EVERY CYCLE Longer dark interval (outside of 11-13) is self-selected as the night phase. 11-13 is the bistability region Cycles can be different from 24 hrs.

33. LONGER INTERVAL is ALWAYS SELECTED as NIGHT PHASE DROSOPHILA ECLOSION ACROPHASES with DIFFERENT INTERVALS for TWO-PULSE SKELETON PHOTOPERIODS Pittendrigh

34. BISTABILITY IN HAMSTER ACTIVITY RHYTHM ENTRAINMENT SKELETON PHOTOPERIOD 13.5:0.25:10:0.25 hrs

35. SINGLE PULSES EVERY 24h Sometimes called T-cycles A single light pulse (e.g., 15 min, 1hr) every cycle will entrain a circadian rhythm. Cycle may be =24h, longer or shorter than 24 Organism self selects location of light pulse If tau is greater than 24 it will fall at late night If tau is less than 24 it will fall at early night

36. HAMSTER ACTIVITY RHYTHM is ENTRAINED by SINGLE LIGHT PULSES of CYCLE LENGTHS LONGER or SHORTER THAN 24 h and PULSES ARE POSITIONED DIFFERENTLY

37. HOW DO YOU EXPERIMENTALLY PROBE FOR MECHANISM? ALTER CONDITIONS (temperature, light cycle) APPLY INHIBITORS OR DRUGS (what kinds?) ISOLATE MUTANTS (select for what?)

38. DROSOPHILA CLOCK MUTANTS in the PERIOD (per) GENE

39. PERIOD MUTANTS OF CYANOBACTERIA (kai GENE) KONDO ET AL.1995

40. CIRCADIAN CLOCK GENES 1) DROSOPHILA per ( PERIOD ) tim ( TIMELESS ) 2) NEUROSPORA frq ( FREQUENCY ) prd ( PERIOD ) 3) CYANOBACTERIA kai ( CYCLE IN JAPANESE ) 4) ARABIDOPSIS toc1 (TIMING OF CAB) lhy (LATE ELONG HYPOCOTYL) cca1 (CIRC CLOCK ASSOCIATED) 5) MOUSE clk ( CLOCK ) per1 ( PERIOD ) 6) HAMSTER tau ( PERIOD )

41. POSTULATED FEEDBACK LOOPS IN REGULATION OF CLOCK GENE EXPRESSION

42. CORE CLOCK COMPONENTS IN FEEDBACK LOOPS OF 3 SYSTEMS