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G A L E N GALEN-IN-USE: Tools and MethodologySlide 1 Rubrics to Dissections to GRAIL to Classifications GALEN-IN-USE A graphical overview of the tools.

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Presentation on theme: "G A L E N GALEN-IN-USE: Tools and MethodologySlide 1 Rubrics to Dissections to GRAIL to Classifications GALEN-IN-USE A graphical overview of the tools."— Presentation transcript:

1 G A L E N GALEN-IN-USE: Tools and MethodologySlide 1 Rubrics to Dissections to GRAIL to Classifications GALEN-IN-USE A graphical overview of the tools and methodologies being used in the GALEN-IN-USE project to develop a classification of surgical procedures The slides in this presentation have accompanying notes. These are visible from the ‘View…Notes Pages’ option on the main PowerPoint menu. http://www.galen-organisation.com/ http://www.cs.man.ac.uk/mig/galen/

2 G A L E N GALEN-IN-USE: Tools and MethodologySlide 2 GALEN-IN-USE Partners University of Manchester, VAMP Health, UK University of Nijmegen, Holland EFCC and its affiliates: WCC, NOMESCO, CNR Rome, U St Etienne WCC, NOMESCO, CNR Rome, U St Etienne IASIST, IDGmbH, CMITD, STAKE, U Louvain IASIST, IDGmbH, CMITD, STAKE, U Louvain University Hospital of Geneva, LNAT, Switzerland OLE, RAMIT, Datasoft, Belgium GSF Medis, U Hildesheim, Germany CNR, Rome, Italy SPRI, U Linköping, Sweden VTT, Oulu Univ Hospital, Medici Data, Finland

3 G A L E N GALEN-IN-USE: Tools and MethodologySlide 3 S urgical P rocedure E ntry T ool SPET ICD ICPC SNOMED

4 G A L E N GALEN-IN-USE: Tools and MethodologySlide 4 RUBRIC "dividing of papillary muscle" CODE "35.31.i1" MAIN dividing ACTS_ON papillary muscle HAS_OTHER_FEATURE method VALUE induced arrest of heart Dissection SPET

5 G A L E N GALEN-IN-USE: Tools and MethodologySlide 5 RUBRIC "operations on papillary muscle" CODE "35.31" MAIN surgical deed ACTS_ON papillary muscle HAS_OTHER_FEATURE method VALUE induced arrest of heart RUBRIC "dividing of papillary muscle" CODE "35.31.i1" MAIN dividing ACTS_ON papillary muscle HAS_OTHER_FEATURE method VALUE induced arrest of heart RUBRIC "reattachment of papillary muscle" CODE "35.31.i2" MAIN repairing ACTS_ON papillary muscle BY_TECHNIQUE reattaching ACTS_ON papillary muscle HAS_OTHER_FEATURE method VALUE induced arrest of heart RUBRIC "repair of papillary muscle" CODE "35.31.i3" MAIN repairing ACTS_ON papillary muscle HAS_OTHER_FEATURE method VALUE induced arrest of heart ‘Sibling’ codes Dissections

6 G A L E N GALEN-IN-USE: Tools and MethodologySlide 6 RUBRIC "operations on papillary muscle" CODE "35.31" MAIN surgical deed ACTS_ON papillary muscle HAS_OTHER_FEATURE method VALUE induced arrest of heart RUBRIC "dividing of papillary muscle" CODE "35.31.i1" MAIN dividing ACTS_ON papillary muscle HAS_OTHER_FEATURE method VALUE induced arrest of heart RUBRIC "reattachment of papillary muscle" CODE "35.31.i2" MAIN repairing ACTS_ON papillary muscle BY_TECHNIQUE reattaching ACTS_ON papillary muscle HAS_OTHER_FEATURE method VALUE induced arrest of heart RUBRIC "repair of papillary muscle" CODE "35.31.i3" MAIN repairing ACTS_ON papillary muscle HAS_OTHER_FEATURE method VALUE induced arrest of heart Template Interpreter and GRAIL Generator Dissections

7 G A L E N GALEN-IN-USE: Tools and MethodologySlide 7 Expansion Algorithm Map ‘descriptors’ Map ‘descriptors’ to GRAIL concepts (usually one-to-one) Map ‘Links’ Map ‘Links’ to GRAIL link-concept-link fragments usually one to many

8 G A L E N GALEN-IN-USE: Tools and MethodologySlide 8 Dissection GRAIL

9 G A L E N GALEN-IN-USE: Tools and MethodologySlide 9 Automatic GRAIL Classification GALEN Terminology Server Browse... GRAIL

10 G A L E N GALEN-IN-USE: Tools and MethodologySlide 10 GALEN Terminology Server Classification of original rubrics Browse... GRAIL GALEN Terminology Server

11 G A L E N GALEN-IN-USE: Tools and MethodologySlide 11 Different organisation New organisation calculated automatically, based on the structure provided in the dissection, and in the GRAIL Common Reference Model. [35.31.i2] is now a child of [35.31.i3], not a sibling (as in the original source).

12 G A L E N GALEN-IN-USE: Tools and MethodologySlide 12 Browse... GRAIL Multilingual Natural Language DissectionRubric

13 G A L E N GALEN-IN-USE: Tools and MethodologySlide 13 '037 Biopsie rénale isolée par lombotomie' SurgicalDeed which isCharacterisedBy (performance whichG isEnactmentOf (BiopsyingProcess whichG < actsSpecificallyOn Kidney hasSpecificSubprocess (SurgicalApproaching whichG hasPhysicalMeans ((Route whichG passesThrough Loin))) >)) en: 'kidney biopsy by lumbotomie' fr: 'biopsie rénale par lombotomie' ge: 'Biopsie der Niere durch Lumbotomie' du: 'biopsie van de nier door lombotomie?' GRAIL Multilingual Natural Language Rubric Language Generation: example 1

14 G A L E N GALEN-IN-USE: Tools and MethodologySlide 14 '109 Echographie prostatique transrectale' SurgicalDeed which isCharacterisedBy (performance whichG isEnactmentOf ((ImagingProcess which playsClinicalRole SurgicalRole) whichG < actsSpecificallyOn ProstateGland hasSpecificPhysicalMeans UltrasonographyMachine hasSpecificSubprocess (SurgicalApproaching whichG hasPhysicalMeans ((Route which hasColinearityWith Rectum))) >)) en: 'transrectal prostate echographie' fr: 'echographie transrectale de la prostate' ge: 'transrektale Sonographie der Prostata' du: 'transrectale echografie van de prostaat' GRAIL Multilingual Natural Language Rubric Language Generation: example 2

15 G A L E N GALEN-IN-USE: Tools and MethodologySlide 15 '252 Exérèse d''une tumeur de la glande surrénale à ciel ouvert' SurgicalDeed which isCharacterisedBy (performance whichG isEnactmentOf ((Excising which playsClinicalRole SurgicalRole) whichG < actsSpecificallyOn (NeoplasticLesion whichG hasSpecificLocation AdrenalGland) hasSpecificSubprocess (SurgicalApproaching whichG hasSurgicalOpenClosedness (SurgicalOpenClosedness whichG hasAbsoluteState surgicallyOpen)) >)) en: 'surgically open extracting of an adrenal gland neoplastic lesion' fr: 'extraction d''une tumeur de la glande surrénale à ciel ouvert' ge: 'offene Extraktion eines Tumors der Nebenniere' du: 'open extractie van een tumor van de bijnier' GRAIL Multilingual Natural Language Rubric Language Generation: example 3

16 G A L E N GALEN-IN-USE: Tools and MethodologySlide 16 RUBRIC "valgiserende osteotomie van overig gespecificeerd bot" PARAPHRASE "osteotomy of bone with purpose to create a valgising position, without humerus, without radius, without ulna, without metacarpalen and phalanx of hand, without femur, without tibia, without fibula and without metatarsalen and phalanx of foot" CODE "5-781.29" ENGLISH_RUBRIC "valgising osteotomy of other specified bone" MAIN cutting TO_ACHIEVE Deed:valgising ACTS_ON Pathology:pathological posture ACTS_ON bone WITHOUT cutting TO_ACHIEVE Deed:valgising ACTS_ON Pathology:pathological posture ACTS_ON humerus / radius / ulna / femur / tibia / fibula / os metacarpale / os metatarsale / phalanx Why Templates? Small template produces large Grail...

17 G A L E N GALEN-IN-USE: Tools and MethodologySlide 17 #printTime. #printMessage 'valgiserende osteotomie van overig gespecificeerd bot'. ((SurgicalDeed which < isCharacterisedBy (performance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Bone >)) isCharacterisedBy (nonPerformance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Humerus >)) >) extrinsically hasRubric 'valgiserende osteotomie van overig gespecificeerd bot'; extrinsically hasParaphrase 'osteotomy of bone with purpose to create a valgising position, without humerus, without radius, without ulna, without metacarpalen and phalanx of hand, without femur, without tibia, without fibula and without metatarsalen and phalanx of foot'; extrinsically hasCode '5-781.29'; extrinsically hasEnglishRubric 'valgising osteotomy of other specified bone') extrinsically hasPhysicalSource 'wccfix.txt'. ((SurgicalDeed which < isCharacterisedBy (performance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Bone >)) isCharacterisedBy (nonPerformance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Radius >)) >) 1 2 3 4 5 Grail

18 G A L E N GALEN-IN-USE: Tools and MethodologySlide 18 extrinsically hasRubric 'valgiserende osteotomie van overig gespecificeerd bot'; extrinsically hasParaphrase 'osteotomy of bone with purpose to create a valgising position, without humerus, without radius, without ulna, without metacarpalen and phalanx of hand, without femur, without tibia, without fibula and without metatarsalen and phalanx of foot'; extrinsically hasCode '5-781.29'; extrinsically hasEnglishRubric 'valgising osteotomy of other specified bone') extrinsically hasPhysicalSource 'wccfix.txt'. ((SurgicalDeed which < isCharacterisedBy (performance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Bone >)) isCharacterisedBy (nonPerformance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Ulna >)) >) extrinsically hasRubric 'valgiserende osteotomie van overig gespecificeerd bot'; extrinsically hasParaphrase 'osteotomy of bone with purpose to create a valgising position, without humerus, without radius, without ulna, without metacarpalen and phalanx of hand, without femur, without tibia, without fibula and without metatarsalen and phalanx of foot'; extrinsically hasCode '5-781.29'; extrinsically hasEnglishRubric 'valgising osteotomy of other specified bone') extrinsically hasPhysicalSource 'wccfix.txt'. ((SurgicalDeed which < isCharacterisedBy (performance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Bone >)) 1 2 3 4 5 Grail

19 G A L E N GALEN-IN-USE: Tools and MethodologySlide 19 isCharacterisedBy (nonPerformance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Femur >)) >) extrinsically hasRubric 'valgiserende osteotomie van overig gespecificeerd bot'; extrinsically hasParaphrase 'osteotomy of bone with purpose to create a valgising position, without humerus, without radius, without ulna, without metacarpalen and phalanx of hand, without femur, without tibia, without fibula and without metatarsalen and phalanx of foot'; extrinsically hasCode '5-781.29'; extrinsically hasEnglishRubric 'valgising osteotomy of other specified bone') extrinsically hasPhysicalSource 'wccfix.txt'. ((SurgicalDeed which < isCharacterisedBy (performance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Bone >)) isCharacterisedBy (nonPerformance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Tibia >)) >) extrinsically hasRubric 'valgiserende osteotomie van overig gespecificeerd bot'; extrinsically hasParaphrase 'osteotomy of bone with purpose to create a valgising position, without humerus, without radius, without ulna, without metacarpalen and phalanx of hand, without femur, without tibia, without fibula and without metatarsalen and phalanx of foot'; extrinsically hasCode '5-781.29'; extrinsically hasEnglishRubric 'valgising osteotomy of other specified bone') extrinsically hasPhysicalSource 'wccfix.txt'. ((SurgicalDeed which < isCharacterisedBy (performance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG 1 2 3 4 5 Grail

20 G A L E N GALEN-IN-USE: Tools and MethodologySlide 20 actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Bone >)) isCharacterisedBy (nonPerformance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Fibula >)) >) extrinsically hasRubric 'valgiserende osteotomie van overig gespecificeerd bot'; extrinsically hasParaphrase 'osteotomy of bone with purpose to create a valgising position, without humerus, without radius, without ulna, without metacarpalen and phalanx of hand, without femur, without tibia, without fibula and without metatarsalen and phalanx of foot'; extrinsically hasCode '5-781.29'; extrinsically hasEnglishRubric 'valgising osteotomy of other specified bone') extrinsically hasPhysicalSource 'wccfix.txt'. ((SurgicalDeed which < isCharacterisedBy (performance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Bone >)) isCharacterisedBy (nonPerformance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Metacarpal >)) >) extrinsically hasRubric 'valgiserende osteotomie van overig gespecificeerd bot'; extrinsically hasParaphrase 'osteotomy of bone with purpose to create a valgising position, without humerus, without radius, without ulna, without metacarpalen and phalanx of hand, without femur, without tibia, without fibula and without metatarsalen and phalanx of foot'; extrinsically hasCode '5-781.29'; extrinsically hasEnglishRubric 'valgising osteotomy of other specified bone') extrinsically hasPhysicalSource 'wccfix.txt'. ((SurgicalDeed which < 1 2 3 4 5 Grail

21 G A L E N GALEN-IN-USE: Tools and MethodologySlide 21 isCharacterisedBy (performance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Bone >)) isCharacterisedBy (nonPerformance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Metatarsal >)) >) extrinsically hasRubric 'valgiserende osteotomie van overig gespecificeerd bot'; extrinsically hasParaphrase 'osteotomy of bone with purpose to create a valgising position, without humerus, without radius, without ulna, without metacarpalen and phalanx of hand, without femur, without tibia, without fibula and without metatarsalen and phalanx of foot'; extrinsically hasCode '5-781.29'; extrinsically hasEnglishRubric 'valgising osteotomy of other specified bone') extrinsically hasPhysicalSource 'wccfix.txt'. ((SurgicalDeed which < isCharacterisedBy (performance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Bone >)) isCharacterisedBy (nonPerformance whichG isEnactmentOf ((Incising which playsClinicalRole SurgicalRole) whichG < hasSpecificGoal ((Valgising which playsClinicalRole SurgicalRole) whichG actsSpecificallyOn PathologicalStandingPosture) actsSpecificallyOn Phalanx >)) >) 1 2 3 4 5 Grail

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