1. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Concept 5.4: Proteins have many structures, resulting in a wide range of functions Proteins account for more than 50% of the dry mass of most cells Protein functions include structural support, storage, transport, cellular communications, movement, and defense against foreign substances [Animations are listed on slides that follow the figure]

2. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings

3. Enzymes are a type of protein that acts as a catalyst, speeding up chemical reactions Enzymes can perform their functions repeatedly, functioning as workhorses that carry out the processes of life

4. LE 5-16 Substrate (sucrose) Enzyme (sucrose) Fructose Glucose

5. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Polypeptides Polypeptides are polymers of amino acids A protein consists of one or more polypeptides

6. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Amino Acid Monomers Amino acids are organic molecules with carboxyl and amino groups Amino acids differ in their properties due to differing side chains, called R groups Cells use 20 amino acids to make thousands of proteins

7. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Amino Acid Polymers Amino acids are linked by peptide bonds A polypeptide is a polymer of amino acids Polypeptides range in length from a few monomers to more than a thousand Each polypeptide has a unique linear sequence of amino acids

8. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Determining the Amino Acid Sequence of a Polypeptide The amino acid sequences of polypeptides were first determined by chemical methods Most of the steps involved in sequencing a polypeptide are now automated

9. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Protein Conformation and Function A functional protein consists of one or more polypeptides twisted, folded, and coiled into a unique shape The sequence of amino acids determines a protein’s three-dimensional conformation A protein’s conformation determines its function Ribbon models and space-filling models can depict a protein’s conformation

10. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Four Levels of Protein Structure The primary structure of a protein is its unique sequence of amino acids Secondary structure, found in most proteins, consists of coils and folds in the polypeptide chain Tertiary structure is determined by interactions among various side chains (R groups) Quaternary structure results when a protein consists of multiple polypeptide chains Animation: Protein Structure Introduction Animation: Protein Structure Introduction

11. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Primary structure, the sequence of amino acids in a protein, is like the order of letters in a long word Primary structure is determined by inherited genetic information Animation: Primary Protein Structure Animation: Primary Protein Structure

12. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The coils and folds of secondary structure result from hydrogen bonds between repeating constituents of the polypeptide backbone Typical secondary structures are a coil called an alpha helix and a folded structure called a beta pleated sheet Animation: Secondary Protein Structure Animation: Secondary Protein Structure

13. LE 5-20b Amino acid subunits  pleated sheet  helix

14. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Tertiary structure is determined by interactions between R groups, rather than interactions between backbone constituents These interactions between R groups include hydrogen bonds, ionic bonds, hydrophobic interactions, and van der Waals interactions Strong covalent bonds called disulfide bridges may reinforce the protein’s conformation Animation: Tertiary Protein Structure Animation: Tertiary Protein Structure

15. LE 5-20d Hydrophobic interactions and van der Waals interactions Polypeptide backbone Disulfide bridge Ionic bond Hydrogen bond

16. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Quaternary structure results when two or more polypeptide chains form one macromolecule Collagen is a fibrous protein consisting of three polypeptides coiled like a rope Hemoglobin is a globular protein consisting of four polypeptides: two alpha and two beta chains Animation: Quaternary Protein Structure Animation: Quaternary Protein Structure

17. LE 5-20e  Chains  Chains Hemoglobin Iron Heme Collagen Polypeptide chain Polypeptide chain

18. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Sickle-Cell Disease: A Simple Change in Primary Structure A slight change in primary structure can affect a protein’s conformation and ability to function Sickle-cell disease, an inherited blood disorder, results from a single amino acid substitution in the protein hemoglobin

19. LE 5-21a Red blood cell shape Normal cells are full of individual hemoglobin molecules, each carrying oxygen. 10 µm Red blood cell shape Fibers of abnormal hemoglobin deform cell into sickle shape.

20. LE 5-21b Primary structure Secondary and tertiary structures 1 2 3 Normal hemoglobin Val His Leu 4 Thr 5 Pro 6 Glu 7 Primary structure Secondary and tertiary structures 1 2 3 Sickle-cell hemoglobin Val His Leu 4 Thr 5 Pro 6 ValGlu 7 Quaternary structure Normal hemoglobin (top view)         Function Molecules do not associate with one another; each carries oxygen. Quaternary structure Sickle-cell hemoglobin Function Molecules interact with one another to crystallize into a fiber; capacity to carry oxygen is greatly reduced. Exposed hydrophobic region  subunit

21. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings What Determines Protein Conformation? In addition to primary structure, physical and chemical conditions can affect conformation Alternations in pH, salt concentration, temperature, or other environmental factors can cause a protein to unravel This loss of a protein’s native conformation is called denaturation A denatured protein is biologically inactive

22. LE 5-22 Denaturation Renaturation Denatured proteinNormal protein