2. The following is a map of four genes on a chromosome:
a) Between which two genes would you expect the lowest highest frequency of recombination?

3. Sex-linked Trait Problem
Mendelian Genetics
Sex-linked Trait Problem
4/15/2017
Example: Eye color in fruit flies
(red-eyed male) x (white-eyed female) XRY x XrXr
Remember: the Y chromosome in males does not carry traits.
RR = red eyed
Rr = red eyed
rr = white eyed
XY = male
XX = female
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4. Sex-linked Trait Solution:
Mendelian Genetics
4/15/2017
Sex-linked Trait Solution: XR Xr Y
50% red eyed female
50% white eyed male
XR Xr
Xr Y
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5. copyright cmassengale
Mendelian Genetics
4/15/2017
Female Carriers
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6. Example: Sickle cell. A mutation in a gene causes multiple symptoms
Pleiotrophy
Example: Sickle cell. A mutation in a gene causes multiple symptoms

7. Epistasis
In genetics, epistasis is the phenomenon where the effects of one gene are modified by one or several other genes, which are sometimes called modifier genes.

8. Polygenic Inheritance
Polygenic inheritance is when a single trait is controlled by 2 or more sets of alleles. Most human traits are polygenically inherited. Examples would be skin and eye color. This explains how you can have several different phenotypes for one trait and how parents can have offspring with eye color or skin color different from what they have.

9. Chapter 15~ The Chromosomal Basis of Inheritance

10. The Chromosomal Theory of Inheritance
Genes have specific loci on chromosomes and chromosomes undergo segregation and independent assortment

11. Chromosomal Linkage XX (female) vs. XY (male)
Morgan
Drosophilia melanogaster
XX (female) vs. XY (male)
Sex-linkage: genes located on a sex chromosome
Linked genes: genes located on the same chromosome that tend to be inherited together

12. Classes of chromosomes
autosomal chromosomes
sex chromosomes

13. Discovery of sex linkage
true-breeding
red-eye female
true-breeding
white-eye male X P
Huh! Sex matters?!
100%
red eye offspring F1
generation
(hybrids)
100%
red-eye female
50% red-eye male
50% white eye male F2
generation

14. What’s up with Morgan’s flies?x x RR rr Rr Rr  r r R r R Rr Rr R RR Rr
Doesn’t work that way! R Rr Rr r Rr rr
100% red eyes
3 red : 1 white

15. Linked genes

16. Genetics of Sex X Y X XX XY X XX XY
In humans & other mammals, there are 2 sex chromosomes: X & Y
2 X chromosomes
develop as a female: XX
gene redundancy, like autosomal chromosomes
an X & Y chromosome
develop as a male: XY
no redundancy X Y X XX XY X XX XY
50% female : 50% male

17. Let’s reconsider Morgan’s flies…x x
XRXR
XrY
XRXr
XRY Xr Y XR Y  XR XR
XRXr
XRY
XRXR
XRY
BINGO! XR Xr
XRXr
XRY
XRXr
XrY
100% red females
50% red males; 50% white males
100% red eyes

18. Genetic recombination
Crossing over Genes that DO NOT assort independently of each other
Genetic maps The further apart 2 genes are, the higher the probability that a crossover will occur between them and therefore the higher the recombination frequency
Linkage maps Genetic map based on recombination frequencies

19. Genes on sex chromosomes
Y chromosome
few genes other than SRY
sex-determining region
master regulator for maleness
turns on genes for production of male hormones
many effects = pleiotropy!
X chromosome
other genes/traits beyond sex determination
mutations:
hemophilia
Duchenne muscular dystrophy
color-blindness
Duchenne muscular dystrophy affects one in 3,500 males born in the United States.
Affected individuals rarely live past their early 20s.
This disorder is due to the absence of an X-linked gene for a key muscle protein, called dystrophin.
The disease is characterized by a progressive weakening of the muscles and loss of coordination.

20. Human sex-linkage
SRY gene: gene on Y chromosome that triggers the development of testes
Fathers= pass X-linked alleles to all daughters only (but not to sons)
Mothers= pass X-linked alleles to both sons & daughters
Sex-Linked Disorders: Color-blindness; Duchenne muscular dystropy (MD); hemophilia

21. Hemophilia is a sex-linked recessive trait defined by the absence of one or more clotting factors.
These proteins normally slow and then stop bleeding.
Individuals with hemophilia have prolonged bleeding because a firm clot forms slowly.
Bleeding in muscles and joints can be painful and lead to serious damage.
Individuals can be treated with intravenous injections of the missing protein.

22. Hemophilia XHXh XHY Hh x HH XH XHXh XH Y Xh XHXH XHXH XHY XHY XH Xh XH
sex-linked recessive
Hemophilia
XHXh
XHY
Hh x HH XH
XHXh XH Y
male / sperm Xh
XHXH
XHXH
XHY
XHY XH Xh
female / eggs XH
XHY
XHXh
XHXh
XhY
XhY Y
carrier
disease

23. X-inactivation Female mammals inherit 2 X chromosomes XH XHXh Xh
one X becomes inactivated during embryonic development
condenses into compact object = Barr body
which X becomes Barr body is random
patchwork trait = “mosaic”
patches of black
XH
XHXh
Xh
tricolor cats can only be female
patches of orange

24. Human sex-linkage
X-inactivation: 2nd X chromosome in females condenses into a Barr body (e.g., tortoiseshell gene gene in cats)

25. Chromosomal Abnormalities
Errors of Meiosis
Chromosomal Abnormalities

26. Chromosomal abnormalities
Incorrect number of chromosomes
nondisjunction
chromosomes don’t separate properly during meiosis
breakage of chromosomes
deletion
duplication
inversion
translocation

27. Nondisjunction
Problems with meiotic spindle cause errors in daughter cells
homologous chromosomes do not separate properly during Meiosis 1
sister chromatids fail to separate during Meiosis 2
too many or too few chromosomes 2n
n-1 n
n+1

28. Alteration of chromosome number
error in Meiosis 1
error in Meiosis 2
all with incorrect number
1/2 with incorrect number

29. Nondisjunction Baby has wrong chromosome number~ aneuploidy trisomy
cells have 3 copies of a chromosome
monosomy
cells have only 1 copy of a chromosome
n+1 n
n-1 n
trisomy
2n+1
monosomy
2n-1

30. Human chromosome disorders
High frequency in humans
most embryos are spontaneously aborted
alterations are too disastrous
developmental problems result from biochemical imbalance
imbalance in regulatory molecules?
hormones?
transcription factors?
Certain conditions are tolerated
upset the balance less = survivable
but characteristic set of symptoms = syndrome

31. Down syndrome
Trisomy 21
3 copies of chromosome 21
1 in 700 children born in U.S.
Chromosome 21 is the smallest human chromosome
but still severe effects
Frequency of Down syndrome correlates with the age of the mother
Trisomy 13 occurs in about 1 out of every 5,000 live births. It is a syndrome with multiple abnormalities, many of which are not compatible with life. More than 80% of children with trisomy 13 die in the first month. Trisomy 13 is associated with multiple abnormalities, including defects of the brain that lead to seizures, apnea, deafness, and eye abnormalities. The eyes are small with defects in the iris (coloboma ). Most infants have a cleft lip and cleft palate, and low-set ears. Congenital heart disease is present in approximately 80% of affected infants. Hernias and genital abnormalities are common.
Trisomy 18 is a relatively common syndrome affecting approximately 1 out of 3,000 live births, and affecting girls more than three times as often as boys. The presence of an extra number 18 chromosome leads to multiple abnormalities. Many of these abnormalities make it hard for infants to live longer than a few months.
The cri du chat syndrome is caused by the deletion of information on chromosome 5. It is likely that multiple genes on chromosome 5 are deleted. One deleted gene, called TERT (telomerase reverse transcriptase) is involved in control of cell growth, and may play a role in how some of the features of cri cu chat develop. The cause of this rare chromosomal deletion is not known, but it is expected that the majority of cases are due to spontaneous loss of a piece of chromosome 5 during development of an egg or sperm. A minority of cases result from one parent carrying a rearrangement of chromosome 5 called a translocation. Between 1 in 20,000 and 1 in 50,000 babies are affected. This disease may account for up to 1% of individuals with severe mental retardation. Infants with cri du chat syndrome commonly have a distinctive cat-like cry. They also have an extensive grouping of abnormalities, with severe mental retardation being the most important.

32. Sex chromosomes abnormalities
Human development more tolerant of wrong numbers in sex chromosome
But produces a variety of distinct syndromes in humans
XXY = Klinefelter’s syndrome male
XXX = Trisomy X female
XYY = Jacob’s syndrome male
XO = Turner syndrome female

33. Klinefelter’s syndrome
XXY male
one in every 2000 live births
have male sex organs, but are sterile
feminine characteristics
some breast development
lack of facial hair
tall
normal intelligence

34. Klinefelter’s syndrome
How many Barr bodies would you expect?

35. Jacob’s syndrome male XYY Males 1 in 1000 live male births
extra Y chromosome
slightly taller than average
more active
normal intelligence, slight learning disabilities
delayed emotional maturity
normal sexual development

36. Trisomy X XXX 1 in every 2000 live births produces healthy females
Why?
Barr bodies
all but one X chromosome is inactivated
How many Barr bodies would you expect?

37. Turner syndrome Monosomy X or X0 1 in every 5000 births
varied degree of effects
webbed neck
short stature
sterile
How many Barr bodies would you expect?

38. Changes in chromosome structure
deletion
loss of a chromosomal segment
duplication
repeat a segment
inversion
reverses a segment
translocation
move segment from one chromosome to another
error of replication
error of crossing over

39. Chromosomal errors VI Deletion Duplication Homologous chromosomes
Inversion
Reciprocal translocation
Nonhomologous chromosomes

40. Genomic imprinting Def: a parental effect on gene expression
Identical alleles may have different effects on offspring, depending on whether they arrive in the zygote via the ovum or via the sperm.
Fragile X syndrome: higher prevalence of disorder and retardation in males