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Published byClarence O’Connor’ Modified over 9 years ago
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What is needed? Raster maps of the study area, can be obtained by a different software like ArcGis. -Raster map of the location of the target species (.csv format). -Raster maps that contains the continuous values for each descriptive variable (.asc format). Each cell of the location map raster can be associated to a vector whose components are the measured variables in the underlying. REMEMBER ALL RASTER HAVE TO BE THE SAME EXTENT AND THEY HAVE TO BE GRIDS BEFORE THEY BECOME ASCII.
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To run ENFA In R, we need to load the adehabitat and ade4 packages. Developed by Clement Calenge in 2006, designed originally for animal habitat selection. Adehabitat contains more than a 100 functions giving tools (including ENFA)frequently used in ecology. Very good graphical output.
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Marginality and specialization Marginality (deviation from the global mean) values ranges between 0 to 1. Values close to 1 means that the species have a habitat preference. If specialization (niche breadth) is occurring, any values exceeding (or close to) one indicate some form of specialization.
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Today’s exercise Load adehabitat and ade4 Download the files Run ENFA for all the individuals Run ENFA for each stage Analyze the outputs
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Diststreams contribute the most to the marginality. This plant is found more likely in areas close to streams. DEM and Canopp contribute the most to the specialization.
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