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Current CPRA Calculation Modified on December 5, 2013.

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Presentation on theme: "Current CPRA Calculation Modified on December 5, 2013."— Presentation transcript:

1 Current CPRA Calculation Modified on December 5, 2013

2 CPRA  Calculated PRA (CPRA) is the percentage of donors expected to have HLA antigens listed as unacceptable for a candidate on the waiting list  CPRA is calculated for kidney, kidney-pancreas and pancreas candidates on the waiting list  If no unacceptable antigens are entered, CPRA value defaults to 0

3 CPRA (Probability of a positive crossmatch) = 1- (1-Σp i ) 2  CPRA is determined using an established algorithm (1, 2)  It was written by two well-recognized population geneticists and is based upon basic principles of population genetics  Additionally, the entire proposal for CPRA (algorithm, frequencies, etc.) was reviewed by OPTN committees, as well as ASHI, through a panel of three reviewers, that included two population geneticists 1. Zachary AA and Braun WE. Calculation of a predictive value for transplantation. Transplantation 1985;39:316-8. 2. Zachary AA and Steinberg AG. Statistical Analysis and Applications of HLA Population Data. In, NR Rose, EC de Marcario, JD Folds, HC Lane, and RM Nakamura, Eds., Manual of Clinical Laboratory Immunology, 5th Edition, Washington, DC, ASM Press, 1997:132-40.

4 Frequencies Current CPRA is calculated based on the data:  HLA frequencies derived from the HLA phenotypes of deceased kidney donors recovered from January 1, 2007 through December 31, 2008  Ethnic frequencies derived from deceased kidney donors recovered from January 1, 2007 through December 31, 2008

5 CPRA Frequencies  Allele group frequencies were derived by gene counting of the broad and split antigens  Two, three, four, and five locus haplotype frequencies were estimated by the expectation maximization algorithm using Arlequin computer program (3) 3. Leffell MS, Cherikh WS, Land GA, Zachary AA. Improved definition of HLA frequencies among minorities and applicability to estimates of transplant compatibility. Transplantation 2007; 83:964-972

6 Ethnic Frequencies (Four Major Groups)  CPRA is also based on ethnic frequencies for four major groups (White, African American, Hispanic and Asian ethnicities)  Ethnic frequencies were derived based on deceased kidney donors recovered from January 1, 2007 through December 31, 2008* NumberProportion White 9,811 0.687 African American 2,101 0.147 Hispanic 2,037 0.143 Asian 333 0.023 Total14,2821.000 * Based on OPTN data as of August 19, 2011 Donors of other ancestry comprised about 1% of total number of deceased kidney donors during this period. These groups were not included.

7 CPRA Calculation 1.Get a list of all unacceptable antigens including equivalences listed in HLA equivalency tables* for all unacceptable antigens (including HLA-C) Example:  A kidney candidate is listed with antibodies to A1, B35, DR11, DQ7 and C7  DQ7 is equivalent to DQ7 and DQ3  A1, B35, DR11 and C7 are only equivalent to themselves  CPRA calculation will use A1, B35, DR11, DQ3, DQ7 and C7 frequencies * The current version of HLA equivalency tables can be found on OPTN site at http://optn.transplant.hrsa.gov/policiesAndBylaws/policies.asp

8 CPRA Calculation (cont’d) 2.For each ethnicity separately:  S1 - Sum all the 1 locus haplotype frequencies (A, B, DR, DQ, C)  S2 - Sum all the 2 locus haplotype frequencies (AB, ADR, ADQ, AC, BDR, BDQ, BC, DRDQ, DRC, DQC)  S3 - Sum all the 3 locus haplotype frequencies (ABDR, ABDQ, ABC, ADRDQ, ADRC, ADQC, BDRDQ, BDRC, BDQC, DRDQC)  S4 - Sum all 4 locus haplotype frequencies (ABDRDQ, ABDRC, ABDQC, ADRDQC, BDRDQC)  S5 – Sum all 5 locus haplotype frequencies (ABDRDQC)  CPRA for the ethnicity is: probability of a positive crossmatch = 1 – probability of a negative crossmatch = 1 – (1 – S1 + S2 – S3 + S4 – S5) 2

9 CPRA Calculation (cont’d)  Since all allele groups weren’t observed within all ethnic groups, some locus haplotypes don’t have frequencies  DR51, DR52, DR53, Bw4 and Bw6 frequencies are based on the approved equivalences listed in HLA equivalency tables

10 Example* CPRA based on A1, B35, DR11, DQ3, DQ7 and C7 S1 - Sum all the allele (1 locus) frequencies (A, B, DR, DQ, C) White African American HispanicAsian A10.1600000.0530580.0581640.040948 B350.0846670.0788370.1608270.071121 DR110.0936670.1303960.0918010.056034 DQ30.0378330.0248800.0448490.040948 DQ70.1771670.1693650.2053260.150862 C70.3060000.2119300.2648910.230603 Total (S1)0.8593340.6684660.8258580.590516

11 Example (cont’d) CPRA based on A1, B35, DR11, DQ3, DQ7 and C7  S2 - Sum all the 2 locus haplotype frequencies (AB, ADR, ADQ, AC, BDR, BDQ, BC, DRDQ, DRC, DQC) WhiteAfrican AmericanHispanicAsian A1; B350.0074270.0026520.0050490.002155 A1; DR110.0115150.0055350.0068200.001811 A1; DQ30.0064920.0032810.0026880.004310 A1; DQ70.0304500.0079290.0083590.000000 A1; C70.0501170.0255920.0255140.006022 B35; DR110.0116190.0089210.0190390.007035 B35; DQ30.0045960.0031180.0084890 B35; DQ70.0141560.0135010.0416360.031182 B35; C70.0262190.0064260.0083430 DR11; DQ30.0034800.0073860.0031620.000000 DR11; DQ70.0165870.0685270.0812980.045259 DR11; C70.0297630.0305640.0217300.021623 DQ3; C70.0142420.0049000.0139130.003641 DQ7; C70.0575040.0289390.0555670.022250 Total (S2)0.2841670.2172710.3016070.145288

12 Example (cont’d) CPRA based on A1, B35, DR11, DQ3, DQ7 and C7 S3 - Sum all the 3 locus haplotype frequencies (ABDR, ABDQ, ABC, ADRDQ, ADRC, ADQC, BDRDQ, BDRC, BDQC, DRDQC) WhiteAfrican AmericanHispanicAsian A1; B35;DR110.00296600.0012690 A1; B35; DQ30.00071200.0002950 A1; B35; DQ70.00240000.0009680 A1; B35; C70.001297000 A1; DR11; DQ30.0004930.00045900 A1; DR11; DQ70.0039380.0019760.0058680 A1; DR11; C70.0041090.00130400 A1; DQ3; C70.00232400.0008140.002155 A1; DQ7; C70.0107990.0066070.0006870 B35; DR11; DQ30.0011210.0011990.0005500 B35; DR11; DQ70.0027500.0064240.0157610.007008 B35; DR11; C70.0057390.0008250.0005940.002272 B35; DQ3; C70.0008110.0006070.0009710 B35; DQ7; C70.0044320.0006510.0012730.002621 DR11; DQ3; C70.0013880.0011560.0004760 DR11; DQ7; C70.0044880.0207410.0222170.01315 Total (S3)0.0497670.0419490.0517430.027206

13 Example (cont’d) CPRA based on A1, B35, DR11, DQ3, DQ7 and C7 S4 - Sum all 4 locus haplotype frequencies (ABDRDQ, ABDRC, ABDQC, ADRDQC, BDRDQC) WhiteAfrican American HispanicAsian A1; B35; DR11; DQ30000 A1; B35; DR11; DQ70.00154000.0010140 A1; B35; DR11; C70.000992000 A1; B35; DQ3; C7000.0003500 A1; B35; DQ7; C70.000600000 A1; DR11; DQ3; C70000 A1; DR11; DQ7; C70.00149000.00170300 B35; DR11; DQ3; C70000 B35; DR11; DQ7; C70.000680.0003210.0004670.002272 Total (S4)0.0053020.0020240.0018310.002272

14 Example (cont’d) CPRA based on A1, B35, DR11, DQ3, DQ7 and C7 S5 – Sum all 5 locus haplotype frequencies (ABDRDQC) WhiteAfrican American HispanicAsian A1; B35; DR11; DQ3; C70000 A1; B35; DR11; DQ7; C70.000167000 Total (S4)0.000167000

15 Example (cont’d) CPRA based on A1, B35, DR11, DQ3, DQ7 and C7  CPRA for the ethnicity is: 1 - probability of negative crossmatch = 1 – (1 – S1 + S2 – S3 + S4 – S5) 2 WhiteAfrican American HispanicAsian S10.8593340.6684660.8258580.590516 S20.2841670.2172710.3016070.145288 S30.0497670.0419490.0517430.027206 S40.0053020.0020240.0018310.002272 S50.000167000 Probability of a negative crossmatch 0.1445530.2589590.1813370.280728 Probability of a positive crossmatch 0.8554470.7410410.8186630.719272

16 CPRA Calculation 3.Get the final CPRA by applying ethnic weights:  For each ethnicity multiply CPRA for that ethnicity by ethnic weight  Sum all the values to get the final CPRA Example: White African American Hispanic Asian CPRA for ethnicity 0.8554470.7410410.8186630.719272 Ethnic weight 0.6870.1470.1430.023 CPRA = 0.855447 x 0.687 + 0.741041 x 0.147 + 0.818663 x 0.143 + 0.719272 x 0.023 = 0.83024 or 83%

17 See the attached spreadsheet for HLA frequencies used to calculate CPRA

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