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Leveraging Filtered Push Technology to Enhance Remote Taxonomic Identifications Nico Franz 1, Edward Gilbert 1, Neil Cobb 2 & Paul Morris 3 1 School of Life Sciences, Arizona State University 2 Merriam-Powell Center, Northern Arizona University 3 Museum of Comparative Zoology, Harvard University TDWD 2013 Annual Conference, Florence, Italy Biodiversity Data Quality – Issues, Methods and Tools October 29, 2013
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Currently 9 Thematic Collection Networks with 130 participating institutions A dvancing D igitization of B iodiversity C ollections (NSF ADBC Program) Digitize 1 billion specimens in 10 years
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UNM TAMU ASU DMNS UCB NMSU CSU TTU NAU UA SCAN member collections Average ~ 480 miles apart
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SCAN digitization objectives Digitize 1 million records for southwestern ground-dwelling arthropods Produce 16,000 high-resolution images of species; promote identifications Leverage an interactive identification & annotation workflow via Symbiota Gerstaeckeria porosa (LeConte, 1876) – ASUHIC0017017Crotanius trivittatus (Champion, 1908) – ASUHIC0012067
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SCAN ADBC Ground-Dwelling Arthropod Records SCAN ADBC Non-Target Taxa Records SCAN ADBC Collections SCAN Non-ADBC Broader Impact Records SCAN Broader Impact Collections September, 2013: 510,262 records in SCAN 510,262 specimens in Symbiota 300,984 (59%) georeferenced 338,836 (66%) identified to species 1,016 families 8,056 genera 17,538 species Primary need: remote IDs
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Deployment diagram – Symbiota & Filtered Push interaction Source: http://wiki.filteredpush.org/wiki/FP-Medium_deployment_for_SCANhttp://wiki.filteredpush.org/wiki/FP-Medium_deployment_for_SCAN Filtered Push3 Node http://fp3.acis.ufl.edu/FPAnnotationProcessor-Web/ New, remotely added identifications are grounded in the Annotation Ontology. FP team has developed Symbiota-integrated PHP Client Tools that record and push new annotations to the external FP infrastructure where statistics are kept. SCAN Symbiota Portal http://symbiota1.acis.ufl.edu/scan/portal/index.php New FP Client Tools in Symbiota
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Current workings & look in SCAN
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Homepage – http://symbiota1.acis.ufl.edu/scan/portal/index.phphttp://symbiota1.acis.ufl.edu/scan/portal/index.php Images
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ID = Scarabaeidae Image thumbnail gallery – some are insufficiently identified ID = Epicaerus
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More information – occurrence records, images – is clicks away
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Experts can log in and view a taxon-tailored IDs Needed tab This is the scarab in need of an ID
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Experts can log in and view a taxon-tailored IDs Needed tab This is the scarab in need of an ID Occurrence tab
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Experts can log in and view a taxon-tailored IDs Needed tab This is the scarab in need of an ID Occurrence tab Images tab
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Adding a new identification in the Determination History tab Scientific Name is linked to the SCAN Taxonomic Thesaurus.
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The fully integrated Symbiota tab for IDs is Filtered Push-enabled New = current ID Image remapping Submission to FP
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Confirmation in SCAN Simultaneous ID recording internally (SCAN) and externally (FP)
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Confirmation in SCAN Confirmation in FP3 node Simultaneous ID recording internally (SCAN) and externally (FP) Annotations list view AO translation
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Simultaneous ID recording internally (SCAN) and externally (FP) Confirmation in FP3 node Confirmation in SCAN Annotations detail view RDF / XML translation AO translation
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Future work – 1st production-level Symbiota / FP implementation Optimization of SCAN "IDs Needed" user interface – thumbnail view Roll-out to the SCAN expert community, creation of expert profiles in FP Expansion beyond SCAN members, diversified notification systems "Curculionidae" ("Calles" sp.) – ASUHIC0031695
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TDWG 2013 Symposium organizers – Antonio Mauro Saraiva James Hanken, Maureen Kelly & David Lowery – http://wiki.filteredpush.org/wiki/http://wiki.filteredpush.org/wiki/ ASUHIC digitization team – Sangmi Lee, David Fleming, Soon Flynn, Andrew Jansen, Catherine Mercado, Joshua Persson, Sarah Shirota, Michael Shillingburg. NSF Award EF-1207107. "Digitization TCN: Collaborative Research: Southwest Collections of Arthropods Network (SCAN): a Model for Collections Digitization to Promote Taxonomic and Ecological Research." Acknowledgments http://symbiota1.acis.ufl.edu/scan/portal/index.php http://taxonbytes.org https://sols.asu.edu http://symbiota.org/tiki/tiki-index.php
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