1. Master Summaries for Selected Identified Genes.
Master Summaries for Selected Identified Genes. Marker shapes correspond to trait class: circles, tocopherols; triangles, tocotrienols; squares, total tocochromanols, and diamonds, PC-8. Marker colors indicate compound type: yellow, alpha (α); orange, delta (δ); cyan, gamma (γ); purple, PC-8; brown, summed traits (Σ). Gene names are as they appear in Figure 3. Left panels: Directional gene models are depicted as black arrows and the identified gene as a green arrow. Lines with trait names above gene models indicate RMIP of significant GWAS hits ± 100 kb of the peak RMIP variant. Lines below gene models indicate pairwise LD (r2) of each GWAS variant with the peak RMIP variant (dark blue line). The blue ribbon depicts the highest LD, per 200-bp window, to the peak RMIP variant while black ribbons indicate the density of variants tested in GWAS in the 200-bp window (log2 scale). Darker colors correspond to higher values. Right panels: Correlations (r) between JL-QTL allelic effect estimates and expression of the identified gene across six developing kernel time points. Significant correlations are indicated by trait abbreviations above the respective time point. Traits with both JL and GWAS associations appear in black text to the right of the graph and have solid trend lines and symbols, while those with only JL associations are in gray with dashed trend lines and open symbols.
Christine H. Diepenbrock et al. Plant Cell 2017;29:
©2017 by American Society of Plant Biologists