1. Review Warm-Up What is the Central Dogma?
How does prokaryotic DNA compare to eukaryotic DNA?
How is DNA organized in eukaryotic cells?

2. Ch. 18 Warm-Up Draw and label the 3 parts of an operon.
Contrast inducible vs. repressible operons.
How does DNA methylation and histone acetylation affect gene expression?

3. Ch. 18 Warm-Up Compare DNA methylation and histone acetylation.
What is the role of activators vs. repressors? Where do they bind to?
List the components found in a eukaryotic transcription initiation complex.
What is the function of miRNAs and siRNAs?

4. Ch. 18 Warm-Up
List and describe the 3 processes that are involved in transforming a zygote.
Compare oncogenes, proto-oncogenes, and tumor suppresor genes.
What are the roles of the ras gene and the p53 gene?

5. Regulation of Gene Expression
Chapter 18

6. What you must know:
Genes can be activated by inducer molecules, or they can be inhibited by the presence of a repressor as they interact with regulatory proteins or sequences.
A regulatory gene is a sequence of DNA that codes for a regulatory protein such as a repressor protein.
How the components of an operon function to regulate gene expression in both repressible and inducible operons.
How positive and negative control function in gene expression.
The impact of DNA methylation and histone acetylation on gene expression.
How timing and coordination of specific events are regulated in normal development, including pattern formation and induction.
The role of miRNAs in control of cellular functions.
The role of gene regulation in embryonic development and cancer.

7. Regulation of Gene Expression by Bacteria
Transcription

8. Regulation of metabolic pathways
As the concentration of tryptophan protein increases, what 2 things happen to the metabolic pathway?
Is this an example of positive or negative feedback?
Decreased production of enzyme 1 (and thus less tryptophan produced)
Decreased transcription of trpC gene (and thus less tryptophan produced)
negative

9. Bacterial control of gene expression
Bacteria can respond to environmental change by regulating transcription (to make more or less protein/RNA)
Bacteria have genes clustered into units called operons.
Operons can be regulated.
Turned off: repressed/inhibited .
Turned on: induced

10. Bacterial control of gene expression
Operon: cluster of related genes with on/off switch
Three Parts:
Promoter – where RNA polymerase attaches
Operator – “on/off”, controls access of RNA poly
Genes – code for related enzymes in a pathway
Bacteria ONLY!

11. Draw and label a prokaryotic OPERON
Show where RNA polymerase will attach.

12. Summarize what’s happening in your own words!
Regulatory gene: produces repressor protein that binds to operator to block RNA polymerase and turn operon off
Summarize what’s happening in your own words!

13. Repressible Operon (normally ON  can be turned OFF)
When are the genes transcribed?
When is the repressor inactive?
When the corepressor is bound to the repressor, what happens?
When is transcription off/stopped?

14. Repressible Operon Normally ON Anabolic (builds organic molecules)
Organic molecule product acts as corepressor  binds to repressor protein to activate it
Operon is turned OFF
Eg. trp operon

15. trp operon What is the co-repressor?
How does an increase in tryptophan alter transcription (gene expression)?

16. trp operon
Summarize why the trp operon is a repressible operon. _______________ ___________________________________________________________________________________________________________________________________________________________

17. Inducible Operon (normally OFF  can be turned ON)
When is transcription off/stopped?
When is the repressor inactive?
When the inducer is bound to the repressor, what happens?
When are the genes transcribed?

18. Inducible Operon Normally OFF Catabolic (break down food for energy)
Repressor is active  inducer molecule binds to and inactivates repressor protein
Operon is turned ON and RNA polymerase can transcribe genes
Eg. lac operon

19. lac operon What is the inducer?
How does the inducer inactivate the repressor?
When is the lac operon “off”?
lac operon

20. Summarize why the lac operon is an inducible operon

21. Gene Regulation: Positive vs. Negative Control
Negative control: operons are switched off by active form of repressor protein
Eg. trp operon, lac operon
Positive control: regulatory protein interacts directly with genome to increase transcription
Eg. cAMP & CAP

22. cAMP + CAP = Positive Control
cAMP: accumulates when glucose is scarce
cAMP binds to CAP (catabolite activator protein)
Active CAP  binds to DNA upstream of promoter, ↑ affinity of RNA polymerase to promoter, ↑ transcription

23. When is CAP active?
When CAP is active, what does it do?
When is the lac operon “on”?
Is it when lactose levels are high or low?
Is it when glucose levels are high or low?

24. Summarize in your own words why this is an example of POSITIVE FEEDBACK CONTROL.
____________________________________________________________________________________________________________________________________________________________________________________________________________________________________

25. Amoeba Sisters
Gene Expression and the Order of the Operon

26. POGIL GROUP CHOICE on who turns in the POGIL for your group 
Control of Gene Expression in Prokaryotes
GROUP CHOICE on who turns in the POGIL for your group 
Make sure all member names are on it.