1. Volume 93, Issue 1, Pages 225-231 (July 2007)
Hydrophobic, Hydrophilic, and Charged Amino Acid Networks within Protein 
Md. Aftabuddin, S. Kundu 
Biophysical Journal 
Volume 93, Issue 1, Pages (July 2007)
DOI: /biophysj
Copyright © 2007 The Biophysical Society Terms and Conditions

2. Figure 1
Average strength 〈s〉(k) as a function of degree k of hydrophobic (BN), hydrophilic (IN), charged (CN), and all-amino-acids (AN) networks.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2007 The Biophysical Society Terms and Conditions

3. Figure 2
Ratios p (= 〈C〉/〈Cr〉) and q (= 〈L〉/〈Lr〉) as a function of network size N. The ratio p varies linearly with N, whereas the ratio q varies logarithmically with N. The best-fit curves are shown by lines for the two ratios. (A) All-amino-acids networks (AN). (B) Hydrophobic networks (BN). (C) Hydrophilic networks (IN). (D) Charged networks (CN).
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2007 The Biophysical Society Terms and Conditions

4. Figure 3
Topological clustering coefficient C(k) and weighted clustering coefficient Cw(k) as a function of degree k for different types of networks: (A) all-amino-acids networks (AN), (B) hydrophobic networks (BN), (C) hydrophilic networks (IN), and (D) charged networks (CN) for a representative protein (PDB Id:8ACN). The best-fit curves are shown by lines.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2007 The Biophysical Society Terms and Conditions