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Figure 1. Circular taxonomy tree based on the species that were sequenced in our study. Unless provided in the caption above, the following copyright applies.

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Presentation on theme: "Figure 1. Circular taxonomy tree based on the species that were sequenced in our study. Unless provided in the caption above, the following copyright applies."— Presentation transcript:

1 Figure 1. Circular taxonomy tree based on the species that were sequenced in our study.
Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of Nucleic Acids Research.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Nucleic Acids Res, gkz227, The content of this slide may be subject to copyright: please see the slide notes for details.

2 Figure 2. 2D embedding including a Voronoi diagram of the pairwise sample Mash distances for superorders (A) and orders ... Figure 2. 2D embedding including a Voronoi diagram of the pairwise sample Mash distances for superorders (A) and orders (B). Each point in the plot represents a sample. Taxonomic tree built using the computed Mash distances of the read profiles at the species level (C) in comparison to the taxonomic tree derived from NCBI (D). The branches are colored according to the superorder of the corresponding species. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of Nucleic Acids Research.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Nucleic Acids Res, gkz227, The content of this slide may be subject to copyright: please see the slide notes for details.

3 Figure 3. Overview of reads mapped to the different Rfam classes for all species in this study. The colors are ordered ... Figure 3. Overview of reads mapped to the different Rfam classes for all species in this study. The colors are ordered according to the median mapping ratio of each class. Classes with mapped reads <0.05% are summarized in the category ‘Other’. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of Nucleic Acids Research.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Nucleic Acids Res, gkz227, The content of this slide may be subject to copyright: please see the slide notes for details.

4 Figure 4. Comparison of mapping the reads of the different species against the three miRNA databases: miRBase, miRCarta ... Figure 4. Comparison of mapping the reads of the different species against the three miRNA databases: miRBase, miRCarta and MirGeneDB. The mapping was performed with perfect matches, allowing no mismatches or differences in lengths between read and database sequence. The stacked barplot shows the number of miRNAs found uniquely in the corresponding databases, as well as the different overlaps amongst the databases. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of Nucleic Acids Research.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Nucleic Acids Res, gkz227, The content of this slide may be subject to copyright: please see the slide notes for details.

5 Figure 5. Prediction of novel miRNAs with the tool mirnovo
Figure 5. Prediction of novel miRNAs with the tool mirnovo. (A) Comparison of recovered known miRNAs deposited in the ... Figure 5. Prediction of novel miRNAs with the tool mirnovo. (A) Comparison of recovered known miRNAs deposited in the three databases: miRBase, miRCarta and MirGeneDB. For the mapping, we required at least 90% identity between read and database sequence. The stacked barplot shows the number of miRNAs found uniquely in the corresponding databases, as well as the different overlaps amongst the databases. (B) Number of novel miRNAs predicted by mirnovo and filtered by us for the samples in this study. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of Nucleic Acids Research.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Nucleic Acids Res, gkz227, The content of this slide may be subject to copyright: please see the slide notes for details.

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