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A Consistent Experimental and Modeling Approach to Light-Scattering Studies of Protein-Protein Interactions in Solution  D. Asthagiri, A. Paliwal, D.

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Presentation on theme: "A Consistent Experimental and Modeling Approach to Light-Scattering Studies of Protein-Protein Interactions in Solution  D. Asthagiri, A. Paliwal, D."— Presentation transcript:

1 A Consistent Experimental and Modeling Approach to Light-Scattering Studies of Protein-Protein Interactions in Solution  D. Asthagiri, A. Paliwal, D. Abras, A.M. Lenhoff, M.E. Paulaitis  Biophysical Journal  Volume 88, Issue 5, Pages (May 2005) DOI: /biophysj Copyright © 2005 The Biophysical Society Terms and Conditions

2 Figure 1 Structure of hen egg white lysozyme (Protein Data Bank code 1LYZ). Heavy atoms are depicted as green spheres. High water density sites obtained from MD simulations are displayed as red spheres. Crystallographic waters are shown as blue spheres. Biophysical Journal  , DOI: ( /biophysj ) Copyright © 2005 The Biophysical Society Terms and Conditions

3 Figure 2 SLS plots for lysozyme (cf. Eq. 18) at low ionic strengths. The solid and dashed lines are quadratic fits to the data. The dotted line is a linear fit to the data corresponding to c2≥1.8mg/ml. Note that even these curves give a consistent intercept (1/Mw), but the molecular weight thus calculated is nearly 2kDa lower than the value (14,285Da) that well constrains the full data set. Mw based on amino acid sequence information is 14,320Da. Biophysical Journal  , DOI: ( /biophysj ) Copyright © 2005 The Biophysical Society Terms and Conditions

4 Figure 3 SLS plots for lysozyme at pH 7.0 and various ionic strengths adjusted for the Donnan contribution, ξz2c2/2ρ1ξ=1000/Mw2. The curves are quadratic fits to the data. ß22 is obtained from the slopes of these curves in the limit c2=0. Biophysical Journal  , DOI: ( /biophysj ) Copyright © 2005 The Biophysical Society Terms and Conditions

5 Figure 4 Comparison of experimental and calculated values of ß22, −ß22,l, and 2B2. (Top) −ß22 (●), the interaction contribution to the osmotic second virial coefficient, B2; −ß22,l (□), the purely long-range contribution to ß22. (Bottom) 2B2 (△). The dotted line is a linear fit of the data with a correlation coefficient R2=0.98 and slope of 0.8. The statistical uncertainty due to the Monte Carlo integration of the configurational integral in Eq. 17 is less than the size of the symbols and hence is not shown. Biophysical Journal  , DOI: ( /biophysj ) Copyright © 2005 The Biophysical Society Terms and Conditions

6 Figure 5 Distribution of Iin with (solid bars) and without (dotted bars) specific hydration. Positive Iin values represent favorable orientations. The inset highlights the distribution for the highly complementary configurations. See “Protein-protein interactions” section for the definition of Iin. Biophysical Journal  , DOI: ( /biophysj ) Copyright © 2005 The Biophysical Society Terms and Conditions

7 Figure 6 ß22/z2 as a function of 1/ρ1 (inverse ionic strength) for different proteins. The protein in each panel is (top to bottom): BSA, bovine serum albumin; data (Table V in Edsall et al., 1950). CGA, chymotrypsinogen; data (Figure 4 in Velev et al., 1998) where we have adjusted for the presence of citrate buffer by considering ionization of the buffer at each given pH. SN, staphylococcal nuclease; data (A. Paliwal, D. Asthagiri, D. Abras, A. M. Lenhoff, and M. E. Paulaitis, unpublished results). LYZ, lysozyme; data from Table 1 in this article. Biophysical Journal  , DOI: ( /biophysj ) Copyright © 2005 The Biophysical Society Terms and Conditions


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