Presentation is loading. Please wait.

Presentation is loading. Please wait.

Nelson, PT_Suppl_Table2

Published by Modified over 5 years ago

Similar presentations

Presentation on theme: "Nelson, PT_Suppl_Table2"— Presentation transcript:

1 Nelson, PT_Suppl_Table2
Supplemental Table 2. Top 20 mRNAs which were PmiT-Lys (mRNA knocked down In lysates) although not enriched in anti-AGO co-IP. mRNA -fold decrease in lysate after miR-107 transfection -fold increase in AGO-miRNP after miR-107 transfection ASF1B [not enriched] CBLN2 SPC25 PHF19 TK1 HPGD PLK1 NRG4 MYBL2 KIAA0101 DTL GINS2 HSD17B13 CDCA8 CDCA5 EPHA4 FLRT3 CCNB1 HIST1H1B TCF19

2 Nelson, PT_Suppl_Table3
Supplemental Table 3. Percentage of seed-containing 5’UTR, CDS, and 3’UTR sequences from top 100 PmiT-AGO and PmiT-Lys mRNAs for each of the transfected miRNAs, along with mean length of each (whether or not seed present) in nucleotides  % % of top-100 PmiT-AGO with seed sequences in 5’UTR, CDS, and 3’UTR % of top-100 PmiT-Lys with seed sequences in 5’UTR, CDS, and 3’UTR 5'UTR Mean length CDS 3'UTR miR-103 10% 150.1 83% 1364.5 32% 940.8 9% 190.5 62% 1976.0 38% 1081.0 miR-107 5% 155.1 59% 1181.2 31% 872.3 7% 169.4 63% 1831.4 42% 1005.7 miR-107 MUT1 12% 196.1 45% 1358.9 2% 976.2 4% 243.3 30% 1745.2 6% 1673.2 miR-107 MUT2 152.2 64% 1506.1 994.4 183.6 56% 1854.6 40% 1027.0 miR-16 177.7 69% 1564.7 921.3 15% 183.4 58% 2021.0 22% 1010.6 miR-195 167.9 79% 1313.7 783.7 14% 188.6 1955.8 23% 1004.4 miR-320 217.8 1315.8 1520.8 232.5 47% 1530.9 1709.1

Download ppt "Nelson, PT_Suppl_Table2"

Similar presentations

BME 130 – Genomes Lecture 7 Genome Annotation I – Gene finding & function predictions.

BME 130 – Genomes Lecture 7 Genome Annotation I – Gene finding & function predictions.
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs LEE P. LIM, NELSON C. LAU, PHILIP GARRETT-ENGELE ANDREW GRIMSON,

Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs LEE P. LIM, NELSON C. LAU, PHILIP GARRETT-ENGELE ANDREW GRIMSON,
Lopez de Silanes et al. Suppl-Fig.1 0 10 50 100 246 DNMT3b in HuR siRNA cells t 1/2 (Untr)=2.13 h t 1/2 (Cispl)=3.27 h 0246 0 t 1/2 (Cispl)>8 h t 1/2 (Untr)>8.

Lopez de Silanes et al. Suppl-Fig DNMT3b in HuR siRNA cells t 1/2 (Untr)=2.13 h t 1/2 (Cispl)=3.27 h t 1/2 (Cispl)>8 h t 1/2 (Untr)>8.
Figure S1 0 1 2 3 4 UV- UV+ Relative expression levels of rhoB mRNA by qRT-PCR *

Figure S UV- UV+ Relative expression levels of rhoB mRNA by qRT-PCR *
Fig. 6-CO, p. 184. p. 185a p. 185b p. 185c p. 185d.

Fig. 6-CO, p p. 185a p. 185b p. 185c p. 185d.
Fig. 4. miR-326, miR-330, and miR-3099 bound to the GFAP 3'-UTR and regulated GFAP expression. (A) Schematic diagram of potential binding sequence (seed.

Fig. 4. miR-326, miR-330, and miR-3099 bound to the GFAP 3'-UTR and regulated GFAP expression. (A) Schematic diagram of potential binding sequence (seed.
Volume 342, Issue 1, Pages (January 2014)

Volume 342, Issue 1, Pages (January 2014)
AntimiR-30b Inhibits TNF-α Mediated Apoptosis and Attenuated Cartilage Degradation through Enhancing Autophagy Cell Physiol Biochem 2016;40:883-894 -

AntimiR-30b Inhibits TNF-α Mediated Apoptosis and Attenuated Cartilage Degradation through Enhancing Autophagy Cell Physiol Biochem 2016;40:
From: miR-183 Inhibits UV-Induced DNA Damage Repair in Human Trabecular Meshwork Cells by Targeting of KIAA0101 Invest. Ophthalmol. Vis. Sci.. 2016;57(4):2178-2186.

From: miR-183 Inhibits UV-Induced DNA Damage Repair in Human Trabecular Meshwork Cells by Targeting of KIAA0101 Invest. Ophthalmol. Vis. Sci ;57(4):
A B C D Rao et al., 2012; Supplementary Figure S1 p = 0.03 p = NS

A B C D Rao et al., 2012; Supplementary Figure S1 p = 0.03 p = NS
Supplemental Figure and Tables Legends

Supplemental Figure and Tables Legends
MicroRNA-558 regulates the expression of cyclooxygenase-2 and IL-1β-induced catabolic effects in human articular chondrocytes  S.J. Park, E.J. Cheon,

MicroRNA-558 regulates the expression of cyclooxygenase-2 and IL-1β-induced catabolic effects in human articular chondrocytes  S.J. Park, E.J. Cheon,
MiR-155-5p positively regulates colon cancer cell migration by targeting RhoA 2016 Molecular Biomarkers, Berlin | AMR AL-HAIDARI | Department of Clinical.

MiR-155-5p positively regulates colon cancer cell migration by targeting RhoA 2016 Molecular Biomarkers, Berlin | AMR AL-HAIDARI | Department of Clinical.
Supplemental table 3 miRNA shoot Root + - miRC

Supplemental table 3 miRNA shoot Root + - miRC
Volume 16, Issue 3, Pages (March 2015)

Volume 16, Issue 3, Pages (March 2015)
Supplementary figure S1 by Shin et al.

Supplementary figure S1 by Shin et al.
The Imprinted H19 LncRNA Antagonizes Let-7 MicroRNAs

The Imprinted H19 LncRNA Antagonizes Let-7 MicroRNAs
Transcriptome-wide Discovery of microRNA Binding Sites in Human Brain

Transcriptome-wide Discovery of microRNA Binding Sites in Human Brain
MicroRNA-558 regulates the expression of cyclooxygenase-2 and IL-1β-induced catabolic effects in human articular chondrocytes  S.J. Park, E.J. Cheon,

MicroRNA-558 regulates the expression of cyclooxygenase-2 and IL-1β-induced catabolic effects in human articular chondrocytes  S.J. Park, E.J. Cheon,
Alternative Capture of Noncoding RNAs or Protein-Coding Genes by Herpesviruses to Alter Host T Cell Function  Yang Eric Guo, Kasandra J. Riley, Akiko.

Alternative Capture of Noncoding RNAs or Protein-Coding Genes by Herpesviruses to Alter Host T Cell Function  Yang Eric Guo, Kasandra J. Riley, Akiko.

Similar presentations

Ads by Google