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Overview of Microarray Data Visualization Programs

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Presentation on theme: "Overview of Microarray Data Visualization Programs"— Presentation transcript:

1 Overview of Microarray Data Visualization Programs
Jeff Landgraf Arabidopsis Functional Genomics Consortium MSU-DOE Plant Research Laboratory Michigan State University

2 Software packages for data visualization
Cluster/Treeview- Mike Eisen GeneSpring- Silicon Genetics GeneSight- Biodiscovery Spotfire- Spotfire Resolver- Rosetta Inpharmatics Lucidea- Amersham/Pharmacia Biotech Many others…

3 General Functions Data normalization
Various graphing/filtering capabilities Clustering Hierarchical SOMs K-Means Principal component analysis

4 Genome Formats- GeneSpring
“name list” single column list of gene names “name function” gene name + function “mapped” systematic name, common name, map position, EC number, description, product, phenotype, function, keywords, GenBank locus, synonym, sequence, custom

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16 Tissue Specific Cluster
F/C L/C R/C Si/C St/C

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19 Acknowledgements MSU-Microarray Lab Ellen Wisman Robert Schaffer
Monica Accerbi Verna Simon Scott Lewis Kim Trouten David Green Pieter Steenhuis Green Lab Pam Green Rodrigo Gutierrez

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