1. Review Warm-Up What is the Central Dogma?
How does prokaryotic DNA compare to eukaryotic DNA?
How is DNA organized in eukaryotic cells?

2. Ch. 18 Warm-Up Draw and label the 3 parts of an operon.
Contrast inducible vs. repressible operons.
How does DNA methylation and histone acetylation affect gene expression?

3. Ch. 18 Warm-Up Compare DNA methylation and histone acetylation.
What is the role of activators vs. repressors? Where do they bind to?
List the components found in a eukaryotic transcription initiation complex.
What is the function of miRNAs and siRNAs?

4. Ch. 18 Warm-Up
List and describe the 3 processes that are involved in transforming a zygote.
Compare oncogenes, proto-oncogenes, and tumor suppresor genes.
What are the roles of the ras gene and the p53 gene?

5. Regulation of Gene Expression
Chapter 18

6. What you must know:
Genes can be activated by inducer molecules, or they can be inhibited by the presence of a repressor as they interact with regulatory proteins or sequences.
A regulatory gene is a sequence of DNA that codes for a regulatory protein such as a repressor protein.
How the components of an operon function to regulate gene expression in both repressible and inducible operons.
How positive and negative control function in gene expression.
The impact of DNA methylation and histone acetylation on gene expression.
How timing and coordination of specific events are regulated in normal development, including pattern formation and induction.
The role of miRNAs in control of cellular functions.
The role of gene regulation in embryonic development and cancer.

7. Regulation of Gene Expression by Bacteria
Transcription

8. Regulation of metabolic pathways
As the concentration of tryptophan protein increases, what 2 things happen to the metabolic pathway?
Is this an example of positive or negative feedback?
Decreased production of enzyme 1 (and thus less tryptophan produced)
Decreased transcription of trpC gene (and thus less tryptophan produced)
negative

9. Bacterial control of gene expression
Bacteria can respond to environmental change by regulating transcription (to make more or less protein/RNA)
Bacteria have genes clustered into units called operons.
Operons can be regulated.
Turned off: repressed/inhibited .
Turned on: induced

10. Bacterial control of gene expression
Operon: cluster of related genes with on/off switch
Three Parts:
Promoter – where RNA polymerase attaches
Operator – “on/off”, controls access of RNA poly
Genes – code for related enzymes in a pathway

11. Summarize what’s happening in your own words!
Regulatory gene: produces repressor protein that binds to operator to block RNA polymerase and turn operon off
Summarize what’s happening in your own words!

12. Repressible Operon (normally ON  can be turned OFF)
Inducible Operon (normally OFF  can be turned ON)

13. Repressible Operon Normally ON Anabolic (builds organic molecules)
Organic molecule product acts as corepressor  binds to repressor protein to activate it
Operon is turned OFF
Eg. trp operon

14. trp operon

15. Inducible Operon Normally OFF Catabolic (break down food for energy)
Repressor is active  inducer molecule binds to and inactivates repressor protein
Operon is turned ON and RNA polymerase can transcribe genes
Eg. lac operon

16. lac operon

17. Gene Regulation: Positive vs. Negative Control
Negative control: operons are switched off by active form of repressor protein
Eg. trp operon, lac operon
Positive control: regulatory protein interacts directly with genome to increase transcription
Eg. cAMP & CAP

18. cAMP + CAP = Positive Control
cAMP: accumulates when glucose is scarce
cAMP binds to CAP (catabolite activator protein)
Active CAP  binds to DNA upstream of promoter, ↑ affinity of RNA polymerase to promoter, ↑ transcription

19. Regulation of Gene Expression by Eukaryotes
Many stages

20. Different cells have same genome, but express different genes
Typical human cell: only 20% of genes expressed at any given time
Different cell types (with identical genomes) turn on different genes to carry out specific functions
Differences between cell types is due to differential gene expression

21. Eukaryotic gene expression regulated at different stages

22. Chromatin Structure:
Tightly bound DNA  less accessible for transcription
DNA methylation: methyl groups added to DNA; tightly packed;  transcription (turns genes off)
Histone acetylation: acetyl groups added to histones; chromatin loosened;  transcription (turns genes on)

24. Epigenetic Inheritance
Modifications on chromatin can be passed on to future generations
Unlike DNA mutations, these changes to chromatin can be reversed (de-methylation of DNA)
Explains differences between identical twins
Eg. DNA methylation (gene silencing), histone acetylation, X chromosome inactivation, heterochromatin (silent chromatin)

25. Video: The Epigenome at a Glance
Genetic Science Learning Center