1. Step-by-step demo of using BioMart to extract SNP information
How to use Biomart to find SNP markers

2. How to use Biomart to find SNP markers www.wheat-training.com

3. How to use Biomart to find SNP markers www.wheat-training.com

4. How to use Biomart to find SNP markers www.wheat-training.com
Selects particular data (e.g. chromosomal region)
Choose data to output (e.g. marker names)
How to use Biomart to find SNP markers

5. How to use Biomart to find SNP markers www.wheat-training.com

6. How to use Biomart to find SNP markers www.wheat-training.com

7. How to use Biomart to find SNP markers www.wheat-training.com

8. How to use Biomart to find SNP markers www.wheat-training.com
Choose data to output (e.g. variety/strain the SNP is found in)
How to use Biomart to find SNP markers

9. How to use Biomart to find SNP markers www.wheat-training.com

10. How to use Biomart to find SNP markers www.wheat-training.com

11. How to use Biomart to find SNP markers www.wheat-training.com

12. How to use Biomart to find SNP markers www.wheat-training.com

13. How to use Biomart to find SNP markers www.wheat-training.com
Click “results”
How to use Biomart to find SNP markers

14. How to use Biomart to find SNP markers www.wheat-training.com

15. Summary of variation information
iSelect, Axiom and KASP and HapMap all available
Can see on browser and download on BioMart
Use “filters” to select chromosome regions and varieties (called strains on ensembl)
Use “attributes” to select types of data you want (i.e. columns)
How to use Biomart to find SNP markers

16. How to go from SNP data in Ensembl to getting KASP markers?
Use PolyMarker!
For help see our step by step guide:
How to use Biomart to find SNP markers