Presentation is loading. Please wait.

Presentation is loading. Please wait.

Multiple sequence alignment and analysis of SOFL proteins.

Published byOsvaldo de Sintra Stachinski Modified over 5 years ago

Similar presentations

Presentation on theme: "Multiple sequence alignment and analysis of SOFL proteins."— Presentation transcript:

1 Multiple sequence alignment and analysis of SOFL proteins.
Multiple sequence alignment and analysis of SOFL proteins. (a) Illustration showing the topology of SOFL proteins. Purple rectangular blocks represent the two conserved domains, SOFL-A and SOFL-B. (b) Partial N-terminal amino acid sequence alignment of Arabidopsis thaliana SOFL proteins. The alignment was obtained using JalView Probcons with Defaults program (Malek 2001; Zhang 2003). Semi-conserved amino acids are indicated with a light purple shade. Conserved amino acids are indicated by a darker purple shade. Red squares indicate amino acid residues that were selected for site-directed mutagenesis. WebLogo© analysis of conserved, (c) SOFL-A domain, and (d) SOFL-B domain, using all 289 SOFL protein sequences (Lin and Hu 2013). Red asterisk denotes 100% conserved amino acid residues among all 289 SOFL sequences. Reuben Tayengwa et al. G3 2018;8: ©2018 by Genetics Society of America

Download ppt "Multiple sequence alignment and analysis of SOFL proteins."

Similar presentations

Multiple sequence alignment and alignment editor.

Multiple sequence alignment and alignment editor.
PfDGAT1-1 PfDGAT1-2 AtDGAT1 RcDGAT1 PfDGAT1-1 PfDGAT1-2 AtDGAT1 RcDGAT1 PfDGAT1-1 PfDGAT1-2 AtDGAT1 RcDGAT1 PfDGAT1-1 PfDGAT1-2 AtDGAT1 RcDGAT1 PfDGAT1-1.

PfDGAT1-1 PfDGAT1-2 AtDGAT1 RcDGAT1 PfDGAT1-1 PfDGAT1-2 AtDGAT1 RcDGAT1 PfDGAT1-1 PfDGAT1-2 AtDGAT1 RcDGAT1 PfDGAT1-1 PfDGAT1-2 AtDGAT1 RcDGAT1 PfDGAT1-1.
Supplementary Fig. 1 ClustalW (2.1) multiple sequence alignment and comparison of deduced partial protein sequences of SOS1 in root tissues of wheat genotypes.

Supplementary Fig. 1 ClustalW (2.1) multiple sequence alignment and comparison of deduced partial protein sequences of SOS1 in root tissues of wheat genotypes.
MdSFBB3-alpha MSHVRESETPEDRVVEILSRLPPKSLMRFKCIHKSWFSLINNLSFVAKHLSNSVDNKLSSSTCILLNRSQAHIFPDQSWKQEVFWSMINFSIDSDENNLHYDVEDLN-IP 109 MdSFBB3-beta MSQVHESETPEDKVVEILCRLPPKSLMRFKCIRKSWCTLINRPSFVAKHLNNSVDNKLSSSTCILLNRSQAHIFPDQSWKQEVFWSTINLSIDSDEHNLHYDVEDLI-IP.

MdSFBB3-alpha MSHVRESETPEDRVVEILSRLPPKSLMRFKCIHKSWFSLINNLSFVAKHLSNSVDNKLSSSTCILLNRSQAHIFPDQSWKQEVFWSMINFSIDSDENNLHYDVEDLN-IP 109 MdSFBB3-beta MSQVHESETPEDKVVEILCRLPPKSLMRFKCIRKSWCTLINRPSFVAKHLNNSVDNKLSSSTCILLNRSQAHIFPDQSWKQEVFWSTINLSIDSDEHNLHYDVEDLI-IP.
Membrane topology prediction of the SLC45A2 protein using TMHMM (v. 2

Membrane topology prediction of the SLC45A2 protein using TMHMM (v. 2
Conservation of Structure and Mechanism between Eukaryotic Topoisomerase I and Site-Specific Recombinases  Chonghui Cheng, Paul Kussie, Nikola Pavletich,

Conservation of Structure and Mechanism between Eukaryotic Topoisomerase I and Site-Specific Recombinases  Chonghui Cheng, Paul Kussie, Nikola Pavletich,
Fig. 1. NS1 protein alignment and linear epitope mapping of the 10 antibodies used to run the DENV serotype–specific NS1 rapid tests, pan-DENV NS1 test,

Fig. 1. NS1 protein alignment and linear epitope mapping of the 10 antibodies used to run the DENV serotype–specific NS1 rapid tests, pan-DENV NS1 test,
Sequence alignment of C-terminal phosphorylated plant aquaporins

Sequence alignment of C-terminal phosphorylated plant aquaporins
Grouping of Multiple-Lentigines/LEOPARD and Noonan Syndromes on the PTPN11 Gene  Maria Cristina Digilio, Emanuela Conti, Anna Sarkozy, Rita Mingarelli,

Grouping of Multiple-Lentigines/LEOPARD and Noonan Syndromes on the PTPN11 Gene  Maria Cristina Digilio, Emanuela Conti, Anna Sarkozy, Rita Mingarelli,
Sequence and comparison of the SDS protein.

Sequence and comparison of the SDS protein.
Multiple sequence alignment of S

Multiple sequence alignment of S
Supplemental Figure S1. Alignment of drimenol synthase amino acid sequences from P. hydropiper and V. officinalis. Amino acid sequences were aligned with.

Supplemental Figure S1. Alignment of drimenol synthase amino acid sequences from P. hydropiper and V. officinalis. Amino acid sequences were aligned with.
Motif 1 Motif 3 Motif 6 Motif 2 Motif 5 Motif 4 Motif 4 Motif 1

Motif 1 Motif 3 Motif 6 Motif 2 Motif 5 Motif 4 Motif 4 Motif 1
(A) Block diagram of the precursor proteins predicted from the Oak1, 2, 3, and 4 clones showing the signal peptide (light shading), the regions corresponding.

(A) Block diagram of the precursor proteins predicted from the Oak1, 2, 3, and 4 clones showing the signal peptide (light shading), the regions corresponding.
Extension of the GlyRβ binding site on gephyrin.

Extension of the GlyRβ binding site on gephyrin.
Acid detergent lignin (ADL) concentrations were determined by NIRS prediction based on the calibration equation (Table S1). Acid detergent lignin (ADL)

Acid detergent lignin (ADL) concentrations were determined by NIRS prediction based on the calibration equation (Table S1). Acid detergent lignin (ADL)
Epitopes in the Linker Subdomain Region of Envoplakin Recognized by Autoantibodies in Paraneoplastic Pemphigus Patients  Bingxin Zhang, Rui Zheng, Jing.

Epitopes in the Linker Subdomain Region of Envoplakin Recognized by Autoantibodies in Paraneoplastic Pemphigus Patients  Bingxin Zhang, Rui Zheng, Jing.
Phosphopeptides identified harboring minimal binding motifs

Phosphopeptides identified harboring minimal binding motifs
Deubiquitination of H2B by the SAGA complex destabilizes H2B.

Deubiquitination of H2B by the SAGA complex destabilizes H2B.
Figure 1. Generation of the S250F Aadc mutant mice

Figure 1. Generation of the S250F Aadc mutant mice

Similar presentations

Ads by Google