1. Volume 13, Issue 20, Pages 1758-1767 (October 2003)
A Self-Sustaining, Light-Entrainable Circadian Oscillator in the Drosophila Brain 
Shobi Veleri, Christian Brandes, Charlotte Helfrich-Förster, Jeffrey C. Hall, Ralf Stanewsky 
Current Biology 
Volume 13, Issue 20, Pages (October 2003)
DOI: /j.cub

2. Figure 1
Exon/Intron Structure of the period Locus and period-luciferase Fusion Genes
Upper panel: structure of a 13.2 kb genomic DNA fragment containing the per gene is shown. Restriction enzyme positions indicate the 5′ and 3′ ends of the constructs shown below; +1 indicates the transcription start. Lower panel: the extent of genomic per sequences of the per-luc transgenes used in this study as well as that of the original 7.2 construct [10]. Note that both XLG-luc and 8.0-luc contain the entire per ORF except for 10 amino acids at the C-terminal end (cf. XLG-lacZ[14]).
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3. Figure 2
Bioluminescence Rhythms Recorded from XLG-luc and 8.0-luc:9 Transgenics in Wild-Type and disco Genetic Backgrounds
Left panel: recordings of 4 XLG-luc individuals that were determined to be “rhythmic” after FFT-NLLS analysis (see Experimental Procedures) in a disco+ (top) compared with a disco (middle) genetic background. Note the rapid dampening after transfer to DD; this dampening also becomes apparent after recordings from many rhythmic individuals of each genotype are averaged (bottom). Right panel: recordings of four rhythmic 8.0-luc:9 individuals in disco+ (top) and disco (middle) backgrounds. Note that the 8.0-luc:9 records show no (or almost no) dampening. The weak dampening observed in the average plots (bottom) is a consequence of the different individual free-running periods. Bioluminescence was measured in counts per second (CPS). The black and white bars under each panel indicate when lights were off (12 hr) and on (12 hr), respectively. Gray bars indicate subjective daytime in DD (12 hr).
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4. Figure 3 Average Rest-Activity Pattern under Light-Dark Conditions
Male flies of the indicated genotype were analyzed for 5–7 days under 12 hr:12 hr LD cycles at 25°C. White bars indicate activity levels when the lights were on; black bars indicate activity levels when they were off. SEMs are indicated by the dots above each column. Note that all genotypes, except per01, increase their locomotion before lights off.
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5. Figure 4
Spatial Expression Pattern of PER-LUC Fusion Proteins in Brains of XLG-luc:1 and 8.0-luc:9 Transgenics
(A and B) per01; XLG-luc:1 flies stained with anti-PER (green) and anti-PDF (red) at ZT23. The XLG-luc transgene is expressed in all different groups of clock neurons (DN1, DN3, s-LNv, l-LNv, and LNd) except DN2 cells, which were not stained in this particular brain. Note that only the two LNv groups coexpress XLG-luc and PDF.
(C–K) per01; 8.0-luc:9 brains double-labeled (at ZT23) with anti-PER (green) to reveal transgene expression and anti-TIM (red) to track endogenous TIM expression. (C, F, and I) confocal image showing anti-PER signals or anti-TIM only (D, G, and J) or both (E, H, and K). (C, D, and E) Posterior optical sections showing labeling in the DN1 and DN2; (F, G, and H) posterior optical sections of another brain showing the DN1 and DN3; (I, J, and K) anterior sections showing the LNs and a subset of the DN3. Note that TIM signals are visible in all LNs and DN1-3, but PER immunoreactivity is largely restricted to DN1-3, with the exception of occasional staining in the LNd ([I–K]; Table S2).
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6. Figure 5 PER Expression under Free-Running Conditions
Anti-PER staining in y w (non-transgenic control) and disco;8.0-luc:9 brains, on the fifth day of DD. Left and right panels show staining of the indicated genotype at CT23 and CT11, respectively. Note that in y w, s-LNv and DN3 cells are predominantly stained during subjective night; these results are similar to the signals observed within DN3 cells in disco brains. In both genotypes, the DN2s are mainly stained during subjective day, indicating anti-phase oscillations in this neuronal type.
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7. Figure 6 Quantification of PER Expression after 5 Days in DD
y w (disco+) and disco flies were entrained to 12 hr:12 hr LD cycles for 3 days, then released into 5 days of DD, after which they were collected at the indicated CT. Whole-mounted brains were stained with anti-PER. Brain hemispheres were analyzed separately, and the average numbers of stained cells along with the SEM were plotted for each neuronal group.
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8. Figure 7
Bioluminescence Rhythms Recorded from 8.0-luc:9 Transgenics in Different Photoreceptor-Defective Mutant Backgrounds
8.0-luc:9 transgenics carrying the indicated photoreceptor mutation were analyzed in DD after initially being entrained to at least three cycles of 12 hr:12 hr LD at 25°C. All genotypes show clearly synchronized oscillations. Note that the two genotypes involving cryb demonstrate a phase of peak expression that is delayed with respect to the glass60j case or others that included the cry+ allele (Figure 2, Table 1). Black, white, and gray bars are as in Figure 2.
Current Biology  , DOI: ( /j.cub )