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18. EMBOSS interfaces Command line: Windows, Cygwin WEB:
Jemboss (needs java web start)
EMBOSSGUI (needs Apache or other webserver)
now installed locally in ICGEB server
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21. EMBOSS suggested reading
Chapter 12 of “Sequence analysis in a nutshell” (Markel & Léon
EMBOSS quick guide
“doc” directory for more details
Manual
Programs
Tutorials
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22. EMBOSS
Command line
Windows
UNIX
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23. EMBOSS for UNIX Download EMBOSS-2.8.0.tar from course website
tar xvf EMBOSS tar
cd EMBOSS-2.8.0
./configure
make
make install
ENVIRONMENT SETTINGS: (can be included in .bashrc file)
PATH=$PATH:/home/workshop/EMBOSS-2.8.0/emboss
export PLPLOT_LIB=/home/workshop/EMBOSS-2.8.0/plplot/lib
export EMBOSS_DATA=/home/workshop/EMBOSS-2.8.0/emboss/data
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24. EMBOSSwin
Copy embosswin-0.7-setup into your desktop from course webpage
Double click
Follow the instructions
After finishing the setup
Open windows shell
Proceed with examples
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