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Data Rocks! Epidemiology 101 Epidemiologists.

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Presentation on theme: "Data Rocks! Epidemiology 101 Epidemiologists."— Presentation transcript:

1 Data Rocks! Epidemiology 101 Epidemiologists

2 Summary Measures Ratios Proportions Rates

3 Ratio Comparison of any two numbers
Calculated by dividing one quantity by the other The numerator and denominator are separate and distinct quantities (neither is included in the other) Often see ratios written in the form X:Y. Teacher to student ratio. Teachers and students are distinct, mutually exclusive groups. Student Teacher 8 1 = 8

4 Ratio Example What is the ratio of abortions to live births in Montana? 1,800 induced abortions 12,000 live births Ratio = 1,800/12,000 = .15 Montana’s abortion ratio is 150 abortions per 1,000 live births (or 15 abortions per 100 live births)

5 Only 4 counties meet the national school to nurse ratio standard: Mineral, Glacier, Park, and Sweet Grass

6 Proportion Terminology Comparing two numbers
Proportion = Percent = Prevelance Comparing two numbers Numerator is part of the denominator Styles Percent: 10% Decimal: .10 4 6 = .667 = 66.7%

7 Causes of Unintentional Injuries in Montana, 2010-2013
Other/ Undetermined 28% All of the categories represented here are considered ‘Injury Deaths’. Each individual category (numerator) is included in the denominator.

8 Rates A rate measures the number of events that occur in a defined population, with respect to some unit of time.

9 Crude Rates The numerator is part of the denominator
Numerator: count of events in a time period Denominator: population at risk during that same time period There are other types of rates (miles per hour, etc.). We are usually interested in tracking number of occurrences to some population of interest.

10 Crude Rates Asthma Emergency Department (ED) Visits in Montana in 2016
Count: 2,100 cases Population at Risk: 85,000 people with asthma Constant: 10,000 Rate = times 10,000 = 247 ED visits per 10,000 persons with asthma per year

11 Proportions, Rates, and Ratios
Is the numerator included in the denominator? Yes No Is time included in the denominator? RATE PROPORTION RATIO What is the ratio of females to males in the room? What is the proportion of females?

12 Applying Summary Measures to Disease
Incidence Prevalence Mortality

13

14 Incidence Measures NEW cases of disease among a population at risk of disease over a period of time Examples of diseases/events measured with incidence Cancer Influenza, pertussis, or other notifiable disease Hospitalizations Often reported as a NUMBER or a RATE

15 Prevalence Measures existing cases of a disease at a particular point in time or over a period of time Often reported as a PERCENTAGE We use point prevalence Ex: The prevalence of current adult smokers in Montana is 19.0%. We deal mainly with prevalence, specifically point prevalence. We collect data from surveys that are cross-sectional; they are asking questions at one specific point in time. ATS, BRFSS, YRBS, etc

16 Mortality Measures DEATH due to a particular cause among a population over a period of time. Often reported as a NUMBER or a RATE.

17 Age-adjusted rates Disease or death is often associated with age.
Age-adjusted rates are a way to make more fair comparisons between groups with different age distributions. Use when: Comparing geographic areas Ex: MT to U.S.; or MT to counties; or County A to County B Comparing time periods Ex: to

18 Why age-adjust?

19 Why age-adjust? Number of cancer deaths 1,923 41,467
Mortality rate (crude) per 100,000 people 194.1 220.1

20 Why age-adjust? Number of cancer deaths 1,923 41,467
Mortality rate (crude) 194.1 220.1 Mortality rate (age-adjusted) 159.8 163.9

21 Measures of Uncertainty
Statistics (from samples) estimate the true value of a parameter (from population). There is unavoidable variability because of this called sampling variability. Confidence intervals are most common in health data. Generally what are they? why are they important? what factors influence them?

22 Confidence Intervals We can’t ask all one million Montanans about their health habits. So we sample. BRFSS sample n=9,300 2015 – 24.6% obese (23.4 – 25.8) If we look at all of the different samples of 9,300 people, and we produced an interval estimate for each sample, then 95% of those intervals would contain the true estimate.

23 Absolute obesity prevalence = 24.3%
(If we were able to ask ALL Montanans) 24.3 23.8 (22.6 – 24.9) 24.6 ( )

24 Confidence Intervals 2015 – 24.6% obese Margin of error: 1.2%
= 23.4 24.6%+1.2 = 25.8 95% confidence interval (23.4% – 25.8%)

25 Why do they matter? Confidence intervals are one method to tell if two estimates are significantly different or not Overlapping confidence intervals indicate that there is no significant difference in the two estimates Non-overlapping confidence intervals indicate that there is a significant difference between the two estimates

26 Confidence Intervals Are these significantly different?
11.3% ( ) of youth in MT use smokeless tobacco versus 7.3% ( ) of youth nationwide 88.2% ( ) of mothers in Flathead county initiate breastfeeding versus 76.5% ( ) of mothers in Dawson county. 11.3% 7.3% YES 6 8 10 12 14 NO 88.2% 76.5% 75 80 85 90 95

27 Confidence Intervals BIGGER ≠ BETTER
To your confidence interval: Increase sample size decrease standard error confidence level (from 95% to 90%) Want confidence intervals to be as small as possible. Increasing sample size is always acceptable. Sometimes, have a statistician do a power calculation to determine the margin of error. Standard error, sometimes can reduce measurement (experiments, matched pairs). Decreasing confidence is a trade-off. Not often recommended.

28 Activity Female smoker Female Female Male Male Male smoker

29 Public Health Data Sources
Data Rocks! Public Health Data Sources Part 1

30 Outline Population Estimates Vital Statistics
Hospital and Emergency Department Discharge Data IBIS In Part I, we will be discussing the National Center for Health Statistics Population Estimates, Vital Statistics, and Hospital and Emergency Department Discharge Data. Data from these sources are available on Montana’s Indicator Based Information Systems, also know as IBIS. Furthermore, over the next year, more data will be added to IBIS. Therefore, we will close out Part I by walking through IBIS to explore how you can immediate access to this data.

31 National Center for Health Statistics (NCHS) Population Estimates
First up, we have Population Estimates, which are provided by the National Center for Health Statistics National Center for Health Statistics (NCHS) Population Estimates

32 NCHS Population Estimates
Derived from Census or American Community Survey estimates Provided by the National Center for Health Statistics Bridged Race Population Estimates Single year data for age and county level population estimates No economic information Available via Montana Indicator-Based Information System (IBIS) The National Center for Health Statistics population estimates are derived from Census or American Community Survey data. These estimates included single year data for age and county level data, but they do not contain economic information, just demographic information.

33 NCHS Population Estimates
Age Single Year though 85, 85+ Race 4 Categories: White Black American Indian / Alaska Native Asian / Pacific Islander Hispanic Ancestry (Hispanic / Non-Hispanic) County of residence Sex Single year ( ) Population Estimates Data include: Age Race County of residence Sex

34 Accessing Population Estimates
To access the Population Estimates go to Select Data Queries from the tool bar On the next page, on a tool bar on the left side of the page, select data sets to explore That will take you to a new page that lists all of the available data sets, select population data

35 Select Query Builder for County and Region Estimates On the next page, on the left side tool bar, select Modify Query Definition (may have to select ok on pop up data use agreement) Then the query builder will walk you through step by step to obtain your desired population estimates

36 NCHS Population Estimates
Cody Custis, If IBIS cannot answer your questions, the point of contact for this data set is Cody Custis. His contact information is provided here.

37 Vital Statistics

38 Death Data Data on all resident deaths and deaths that occurred in state Cause of death underlying vs. multiple causes Location of residence down to county Location of death hospital, home, nursing home, or other Demographic information Did tobacco use contribute to death yes, no, probably, unknown Manner of death

39 Birth Data Data on all resident births and births that occurred in state Parental characteristics Location of birth hospital, birthing center, home etc. Prenatal care Smoking/alcohol use during pregnancy Method of delivery Birth outcomes weight, apgar score, abnormal conditions Breastfeeding status at discharge Mention upcoming PRAMS data.

40 Accessing Vital Statistics
CDC Wonder National Vital Statistics Montana IBIS

41 Accessing Vital Statistics
Again, to access Vital Statistics data, you can go to the Montana IBIS website: Select Data Queries from the tool bar On the next page, on a tool bar on the left side of the page, select data sets to explore That will take you back to the exorable data sets page, select vital records birth and death data A drop down will appear with birth data and mortality data, select the data set that you are interested in

42 Assuming we selected the Birth data, that will bring us to Birth Query Module Configuration Selection Let’s say we are interested in Percentage with no prenatal care, so we select that data, which opens a new page: Query Results On the left side of this page, under related links, select Modify Query Definition

43 Selecting Modify Query Definition will bring us to the Query Builder, and walk us through the steps to obtain the specific data we are interested in Once you’ve ran your query, on the left side tool bar, under related links, there are several features available that may be useful to you For example, you can look through different chart options for displaying the queried data You can also save your query definition, access your saved query definitions, and output the data to excel, among other things.

44 Vital Statistics Montana Vital Statistics Office
Todd Koch, Again, if you have any further questions on Vital Statistics, the point of contact is Todd Koch.

45 Hospital and Emergency department discharge data
Moving on to Hospital and Emergency Department Discharge Data Hospital and Emergency department discharge data

46 ED Encounters and Inpatient Admissions
Data on ED and hospital discharges from majority of hospitals in state Voluntary system through MHA Does not represent individual people and cannot be de-duplicated A person may have been transferred to another hospital, which would be counted twice as two discharges Hospital and Emergency Department discharge data consists of information collected by a majority of hospitals throughout Montana. This information is collected through a voluntary system run by the Montana Hospital Association or MHA. Importantly, this data does not represent individual persons and it cannot be de-duplicated.. MEANING: if an individual was transferred from one hospital to another, they would be counted twice and we would have no way of knowing this or accounting for it

47 ED Encounters and Inpatient Admissions
Age Sex Length of stay Date of admission Primary diagnosis Secondary diagnoses Up to 8 total Procedure codes E-codes Up to 3 Total charges County of residence Information that we do obtain from ED encounters and inpatient admissions include the following: Age, sex, length of stay, date of admission, primary diagnosis, secondary diagnoses (up to 8), procedure codes, E-codes, or external cause of injury, (up to 3), Total charges, and county of residence

48 Accessing Hospital Discharge Data
Again, we can access Hospital Discharge Data on the Montana IBIS website: Similar to the other data sets, we would: Select Data Queries from the tool bar On the next page, on a tool bar on the left side of the page, select data sets to explore That will take you back to the exorable data sets page, select Hospital Inpatient Discharge Data Selecting Hospital Inpatient Discharge Data takes us to the Query Module Configuration, including a drop down list for Hospital Discharge Data Let’s pretend we want to look at age-adjusted rates

49 By selecting age adjusted rates, we are brought to the query builder
We can then make selections based on Year: (example selects 2014) Diagnosis: example = 21. Injuries, Poison and Toxic Effect of Drugs Population: SEX (example = both) Residency States: Montana resident or non-resident (example = Montana resident) Geographic area: Health planning region of residence or Urban and Rural Counties of resident (example = all health planning regions, default) How to display the data: example display by geographic area

50 From that query we would obtain the follow data
Then, if I wanted to go back to the tool bar on the left, we could choose to display the data differently through the chart options. For example, if we were to select Vertical Bar we would then be given the following:

51 Accessing ED/Admission Data
Montana Hospital Discharge Data Program Cody Custis, For additional information, the point of contact for Montana Hospital Discharge Data is Cody Custis

52 Montana’s Indicator Based Information System
An Overview To wrap up part I, I am going to give a little bit of a overview of Montana's Indicator Bases Information System, commonly referred to as IBIS.

53 This is not to be confused with the bird, ibis

54 MT - IBIS Public Health Data Resource
Instead, this IBIS is a highly useful resource for obtaining public health data

55 MT - IBIS Multiple roles Database query system Indicator query system
Topic query system

56 MT – IBIS Query Database query system
July 2016: Vital statistics (Birth, Death), Population February 2017: Inpatient admission May 2017: Emergency department As a database query system, IBIS currently includes: Population Estimates Vital Statistics and Inpatient Admission and Emergency Department Data With more data to come

57 MT - IBIS Query Dataset Query System http://ibis.mt.gov/query
If you do not want to go through the IBIS home page every time you want to query data, you can directly link to it using forward slash query in the url Doing so will bring you to the custom query introduction page, the same page we reached when selecting data queries from the top tool bar This page includes additional resources such as basic steps on getting started for querying a data set and data set specific resources such as questionnaires and code lists.

58 MT – IBIS Indicator Indicator Query System
The indicator based query system for IBIS can be found at the url provided here. From the Montana IBIS home page, you would get here by selecting community profiles from the top tool bar (instead of data queries) Then on the left side tool bar, under explore communities, there are two options Community Health Assessment and Community Snapshot Reports Select Community Snapshot Reports Then, just like with the database query system, follow the given steps to obtain the indicator information you are interested in

59 Lewis and Clark County: Demographic Characteristics
For example, we could obtain demographic characteristics for Lewis and Clark County (as pictured here) by doing the following: Select Lewis and Clark County in Step 1 (Select a Community) Then in Step 2, selected Demographic Characteristics (other option being community health indicators) Then in Step 3 selected numerator and denominator definitions to be included in the footnotes

60 MT – IBIS Topics Health Topics http://ibis.mt.gov/topic/Index.html
For health topics on IBIS, the URL is: From the home page: select health topics from the top tool bar Say we are interested in Mental Health, so we click on that

61 Selecting mental health would bring us to the mental health topic page
This page contains several drop downs that include: a description or definition of mental health a brief section on why mental health is important information about what is known about mental health who is at risk for mental health disorders what can be done to reduce the risk of mental health disorders information on how mental health is tracked and finally indicator reports related to mental health

62 MT IBIS That is IBIS in a nutshell It is a work in progress
Future Direction(s) Continue making data more readily Adding more information and more data sets That is IBIS in a nutshell It is a work in progress and something that we are very excited about We hope to continue making informative data more readily available by adding it to IBIS


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