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MSCR Compliance with the NIH Public Access Policy

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Presentation on theme: "MSCR Compliance with the NIH Public Access Policy"— Presentation transcript:

1 MSCR Compliance with the NIH Public Access Policy
Tuesday, September 23, 2014 I2b2 ETL Andrew Post, MD, PhD Director, ACTSI Biomedical Informatics Program

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3 Project Data Project name # of users Data source
Data target (and software version, where applicable) Count of phenotypes computed Count of patients loaded Count of facts loaded (including phenotypes) Project status Hospital readmissions analysis 11 Emory Clinical Data Warehouse (inpatient discharges from 10/ /2011) Tab-delimited file 7,886,868 149,514 41,031,515 Completed UHC Clinical Database (inpatient discharges from 10/2006-3/2011) 593,428,440 11,794,310 1,685,673,683 CardioVascular Research Grid 34 MIMIC-II (all encounters) i2b 13,196 32,074 6,446,413 Quantitative Imaging Network 6 NLST data files (all patients) Neo4j and i2b 53,452 374,164 In development Differential privacy data mart 5 Emory Clinical Data Warehouse (all encounters, de-identified, for all patients seen over a 4 month period) 338,513 34,059,435 Production since July, 2016 Emory i2b2 53 Emory Clinical Data Warehouse (all discharges 1/2011-present, updated daily) 1,599,891 254,127,779 Production since October, 2016

4 Deployment Diagram CDW (Clinical Data Warehouse)
SHRINE Adapter & Web Client Eureka Web App Eureka Services i2b2 Services Clone subset of CDW SHRINE Distributor/ Aggregator or Hub i2b2 Web Client i2b2 CRC Database Eureka Backend Staging Internet DMZ Trusted (Academic) Healthcare


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