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Bioinformatics Resources Provided by WV-INBRE

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Presentation on theme: "Bioinformatics Resources Provided by WV-INBRE"— Presentation transcript:

1 Bioinformatics Resources Provided by WV-INBRE
Mary E. Davis, Ph.D. Bioinformatics Core Director

2 Outline Overview of WV-INBRE Technology supported
Agilent microarray Illumina HiSeq1000 (Next Generation Sequencing) Bioinformatics analysis resources supported Ingenuity Pathways Analysis (IPA) Partek Genomics Suite (Galaxy)

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5 Technology Microarray Next Generation Sequencing
Agilent (Marshall Univ—WV-INBRE) Affymetrix (WVU Neuroscience CoBRE) Next Generation Sequencing Illumina HiSeq (Marshall Univ—WV-INBRE) Illumina MiSeq (WVU Neuroscience CoBRE)

6 Bioinformatics Tools: Ingenuity

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8 IPA Function Result

9 IPA: Effects on Function

10 IPA: Upstream Regulators

11 IPA: Canonical Pathways

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13 IPA: Gene Annotation

14 Example of Findings in Gene Annotation
Ingenuity scientists read literature and enter results using a structured vocabulary. This, in combination with disease and function ontologies, is basis for relationships in pathways.

15 IPA: Pathways

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