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Bioinformatics Resources Provided by WV-INBRE
Mary E. Davis, Ph.D. Bioinformatics Core Director
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Outline Overview of WV-INBRE Technology supported
Agilent microarray Illumina HiSeq1000 (Next Generation Sequencing) Bioinformatics analysis resources supported Ingenuity Pathways Analysis (IPA) Partek Genomics Suite (Galaxy)
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Technology Microarray Next Generation Sequencing
Agilent (Marshall Univ—WV-INBRE) Affymetrix (WVU Neuroscience CoBRE) Next Generation Sequencing Illumina HiSeq (Marshall Univ—WV-INBRE) Illumina MiSeq (WVU Neuroscience CoBRE)
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Bioinformatics Tools: Ingenuity
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IPA Function Result
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IPA: Effects on Function
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IPA: Upstream Regulators
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IPA: Canonical Pathways
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IPA: Gene Annotation
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Example of Findings in Gene Annotation
Ingenuity scientists read literature and enter results using a structured vocabulary. This, in combination with disease and function ontologies, is basis for relationships in pathways.
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IPA: Pathways
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