1. Carey Chapter 3 – Conformations of Alkanes and Cycloalkanes
Figure 3.5

2. Conformational Analysis Cytosine (C) (from TGCA alphabet in DNA

3. Hemoglobin

4. Thymidine – incorporated into DNA as “T”
Zidovudine (AZT) – incorporated into DNA instead of T – stops chain growth

6. 3.1 Conformational analysis of Ethane
Single bonds can rotate around the bond axis, different conformations are possible - conformational analysis
Figure 3.1
(use SpartanModel)

7. 3.1 Conformational analysis
Different 3-D depictions of Ethane
Wedge/dash
Sawhorse
Newman Projection
Rotation around the central C-C bond will cause the hydrogens to interact - rotamers or conformers

8. Both gauche and anti conformers are staggered
Definitions
Gauche
torsion angle 60o
Eclipsed
torsion angle 0o
Anti
torsion angle 180o
Both gauche and anti conformers are staggered
Eclipsed conformers are destabilized by torsional strain

9. 3.1 Conformational analysis of Ethane
Figure 3.4

10. 3.2 Conformational analysis of Butane
Figure 3.7

11. 3.3 Conformations of higher alkanes
eclipsed
eclipsed
Anti
(staggered)
Gauche
(staggered)
Applicable for any
acyclic molecule

13. 3.4 Cycloalkanes – not planar
Cyclohexane

14. 3.5 Cyclopropane and Cyclobutane
Figure 3.10

15. 3.6 Cyclopentane
Figure 3.12

16. 3.7 Conformations of Cyclohexane
Conformationally flexible (without breaking bonds)
Chair
Boat
Chair

17. 3.7-3.8 Cyclohexane – axial and equatorial positions
Figure

18. 3.9 Conformational inversion – ring flipping
Figure 3.18

19. 3.10 Analysis of monosubstituted cyclohexanes
Based on unfavourable 1,3-diaxial interactions

20. 3.11 Disubstituted cycloalkanes - Stereoisomers
Cis-1,2-dimethylcyclopropane is less stable than the trans isomer
Cis-1,2-dimethylcyclohexane is less stable than the trans isomer
Cis-1,3-dimethylcyclohexane is more stable than the trans isomer
Cis-1,4-dimethylcyclohexane is less stable than the trans isomer
All based on interactions between substituents and other groups on the ring

21. 3.11 Disubstituted Cyclopropanes
Figure 3.20

22. 3.12 Disubstituted Cyclohexanes

23. 3.13 Medium and large rings – not covered
3.14 – Polycyclic compounds – covering bicyclics
Bicyclobutane
Bicyclo[3.2.0]heptane
Bicyclo[2.2.2]octane

24. 3.15 Heterocyclic compounds
tetrahydrofuran pyrrolidine piperidine
morphine ritilin librium

25. 3.15 Heterocyclic compounds
D-Glucose (dextrose, blood sugar)