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Databases and the Web By David Drake 12 noon, October 31, 2001
ITC-Research Computing Support Center 244 Wilson Hall, ,
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Databases and the Web Databases in the Abstract
Creating Databases using Relational DataBase Management Systems (RDBMSs) Databases and Web Interfaces CGI: Perl (Server side) Php (Server side) JavaScript (Server or Client side) Cold Fusion ASP ((Visual) Basic) LabVIEW Regular expressions Databases (Microsoft Access, MySQL; normalization) DB management (within windows (Access), Web (MySQL & Access 2k)) Interfacing HTML (post & get methods, cookies) Scripts (server side) Security UVa ITC classes for these programs General advice: Think through & organize db well before implementing when defining tables, set default values
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I. Databases in the Abstract
Definition Normalization Structure Language
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I. A. Definition A database is an organized collection of data whose content must be quickly and easily Accessed Managed Updated A relational database is one whose data are split up into tables, sometimes called relations
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I. B. Normalization (read logical organization)
First Normal Form (1NF) All attributes are single valued & non-repeating Second Normal Form (2NF) Must be 1NF & must have primary key Each non-primary key attribute must be functionally dependent on primary key Third Normal form (3NF) Must be 2NF Each non-primary key attribute must be dependent only on primary key
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I. C. 1. Tables (Relations) Each column constitutes an attribute
Each row constitutes a record or tuple Attribute 1 (column 1) Attribute 2 (column 2) Record 1 (tuple 1) Record 2 (tuple 2)
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I. C. 2. Keys Primary Foreign
An attribute or group of attributes which uniquely identifies each record in a table May not be a Null value Foreign used primarily for enforcing referential integrity, but also for establishing relationships between the two tables
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I. C. 3. Relationships One-to-one (1-to-1)
One-to-many (1-to-M or 1-to-) Many-to-Many (M-to-M or -to-)
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I. D. Structured Query Language (SQL)
Pronounce “Sequel” or “Ess Que Ell” Industry standard language of (Relational) Databases Allows for complete Table Creation, Deletion, Editing Data extraction (Queries) Database management & administration
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II. Creating Databases using RDBMSs
Microsoft Access Creating Tables Entering, Importing, Editing, & Viewing Data Defining Relationships Constructing Queries MySQL … (Documentation) Where to put it (servers at UVa) Ditto MS Access Others mSQL, PostGreSQL, Oracle, DB2, Informix, Sybase, Empress, Adabas, ….
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III. Databases and Web Interfaces (What you need to get started)
Requirements for a Database Web Interface Where to Put Your Database and Scripts Server-Side Scripting Languages ASP Cold Fusion Perl PHP
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III. A. Requirements for a Database Web Interface
Your database (Access, MySQL) A Web server with appropriate RDBMS A way of connecting the two (Common Gateway Interface – CGI – scripts and SQL) Security concerns
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III. B. Where to Put Your Database and Scripts
Academic side of UVa Access ESERVICES es-web1 (web.virginia.edu) MySQL MySQL server (dbm1.itc.virginia.edu) Home directory ( – accessible through blue.unix), faculty, curry, avery, minerva – www, jm.acs – Medical side of UVa See the UVa Health System’s Web Development Center
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Active Server Pages (ASP)
When a browser calls an ASP document, the ASP Server reads the .asp document and Substitutes appropriate files for the (server-side) include statements Runs the ASP code (Visual Basic Script – see the Tutorial and Language Reference, …) Returns the resulting HTML code to the browser Example (code, copy of database)
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ASP Key Points (1) ASP code enclosed in: <% VBScript code %>
Everything outside is HTML The result of the combined HTML and ASP code must be a “standard” HTML document, e.g.: <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Final//EN"> <html> <head> <title>Miracle Drug Study</title> <meta http-equiv="Content-Type" content="text/html; charset=iso "> <meta name="Description" content=""><meta name="Keywords" content=""> <link rel=STYLESHEET type="text/css" href=""> </head> <body> </body> </html>
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ASP Key Points (2) Connect with database: Submit a (read-only) Query:
Create connection object: set conn = Server.CreateObject("ADODB.Connection") Open connection: conn.open("Provider=Microsoft.Jet.OLEDB.4.0;Data Source=f:\web\database\rescomp\study.mdb") Submit a (read-only) Query: Generate SQL statement: SQL = "SELECT FirstName, LastName, DOB, Gender FROM Patients WHERE Gender = '" & Gender & "' ORDER BY FirstName DESC" set Patients = conn.execute(SQL)
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ASP Key Points (3) Move through the data records:
do while NOT Patients.eof Name = Patients(0) & " " & Patients(1) Patients.MoveNext loop Add to or edit table: Create and open Record Set object: set RS = Server.CreateObject("ADODB.Recordset") RS.Open “table name", conn, , adLockOptimistic, adCmdTable (where adLockOptimistic = 3, adCmdTable = 2)
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ASP Key Points (4) Add to or edit table (continued):
Create new record, Edit, & Update: RS.AddNew RS(“Dosage”) = 200 RS.Update Or Find desired record, Edit, & Update : do while NOT RS.eof if RS(“ID”) = 7 then RS(“Dosage”) = RS.Update else RS.MoveNext end if loop
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ASP Key Points (5) Clean up (free server resources) when done:
Queries: Patients.Close set Patients = nothing Record Sets: RS.Close set RS = nothing The Connection: conn.close set conn = nothing
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ASP Security Apart from various Internet Information Services (IIS – Window’s Web service) security holes (for viruses and worms), security is quite good. Use if you want to protect content over the internet – provides Secure Socket Layer (SSL) security
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ASP Resources ITC-Training Workshops
ASP Introduction Microsoft’s VBScript Tutorial & Language Reference (also here) ITC-Desktop’s examples WebMonkey’s tutorial
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ColdFusion Easy-to-learn Server-Side Scripting Language: CFML, or Cold Fusion Markup Language, is embedded in HTML code CF code is enclosed in or by CF tags: <CFtagname CF code > <Cftagname > CF Code </Cftagname > Documents must end in .cfm ColdFusion is Case Insensitive Example (code, copy of database)
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ColdFusion Key Points (1)
All #variables# are enclosed in # signs HTML output which includes of CF variables must be surrounded by CF output tags; e.g.: <Cfset height = “tall”> <CFoutput> The <B>#height#</B> boy fell. <Cfoutput>
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ColdFusion Key Points (1)
Connect with database and run query simultaneously: <CFQUERY Name="Patients" dbtype="dynamic" connectstring="#DBdriver# #DBfile#"> SELECT ID, FirstName, LastName FROM Patients ORDER BY FirstName </CFQUERY> Where the variables are defined beforehand: <CFset Dbdriver = "Driver={MICROSOFT ACCESS DRIVER (*.mdb)}; UID=admin; PWD=; dbq="> <CFset Dbfile = "f:\web\database\rescomp\study.mdb">
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ColdFusion Key Points (2)
Access Query Results <SELECT name="PatientID"> <CFoutput QUERY="Patients"> <OPTION value=#ID#>#FirstName# #LastName# </CFoutput> </SELECT> Insert Data from a Form If a HTML form submits variables to be inserted, do so directly using CFinsert: <CFinsert tablename="Treatment" dbtype="dynamic" connectstring="#DBdriver# #DBfile#"> All variables in the form object (e.g. Form.var1) that match attributes in the table are inserted into the table automatically
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ColdFusion Key Points (3)
Insert Data using Cfquery (SQL): <CFquery name="Treatment" dbtype="dynamic" connectstring="#DBdriver# #DBfile#"> INSERT into Treatment VALUES (#PatientID#, #EventID#, Now(), #Dosage(mg)#, #Severity#, #Time#) </CFquery> Other Data editing features also available; see documentation
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Cold Fusion Resources ITC-Training Workshops
Cold Fusion Introduction Allaire/Macromedia’s Documentation Web page Developing CF Applications CFML Reference CFML Quick Reference ITC-Desktop’s examples WebMonkey’s tutorial Security links page
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Practical Extraction and Report Language (Perl) a. k. a
Practical Extraction and Report Language (Perl) a.k.a. Pathologically Eclectic Rubbish Lister Ubiquitous Originally designed to be a better general purpose tool than a Unix shell, it has grown and spread to be supported from Windows to Macintosh to VMS. Powerful but Cryptic Example (code)
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Perl Key Points (1) The file itself must end in “.cgi” or “.pl”
First line must specify the location of the Perl engine (The DBI module will not work for “#!/usr/local/bin /perl[5]” – see below): #!/uva/bin/perl -w First printed line must be the following if you want its response to go to a browser: print "Content-type: text/html\n\n";
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Perl Key Points (2) Modules
You *must* use the DBI module which allows you to interface with the database (see DBI link 1 & DBI link 2) use DBI; You can (should?) also make use of the CGI module use CGI;
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Perl Key Points (3) Set the usual parameters: Connect to the database:
my $hostname = "dbm1.itc.virginia.edu"; my $username = "dld5s"; # "my" defines a local variable my $password = "ias!"; my $database = $username . "_study"; # = dld5s_study my $data_source = "DBI:mysql:$database:$hostname"; Connect to the database: my $dbh = DBI->connect($data_source, $username, $password) or die "Can't connect to $data_source: $DBI::errstr\n";
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Perl Key Points (4) Define the SQL statement and execute Clean up
my $SQL = "SELECT FirstName, LastName, DOB, Gender FROM Patients WHERE Gender = '$Gender‘ ORDER BY FirstName DESC"; my $sth = $dbh->prepare($SQL) or die "Unable to prepare $SQL: dbh->errstr\n"; $sth->execute or die "Unable to execute query: $dbh->errstr\n"; Clean up $sth->finish; $dbh->disconnect;
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Perl Security Perl/MySQL can be made secure apart from one serious flaw as implemented at UVa: Because web files must be readable by the world (unix permissions), anyone with an account on the server where you run the php code can see the code, including your MySQL $password! A couple of exceptions to this flaw are as follows: If you secure your server so that there are no other users on it (It may** be possible to compile Perl scripts into binary executables using perlcc. Then you must hide or remove your source code containing the MySQL password) One other possible poor to fair workaround: use .htaccess to password protect your php directory (limited access) See the passwords link, security links page
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Perl Resources ITC-Training Workshops Perl Documentation
Perl Programming Introduction Perl Programming for the Web Perl Documentation Overview, Built-in functions, Data types, Regular expressions, … Modules: DBI(1), DBI(2), CGI WebMonkey’s Tutorial, etc. MySQL and PERL for the Web by DuBois (New Riders) Learning Perl by Schwartz & Christiansen (O’Reilly) Programming Perl by Wall, Orwant, & Christiansen (O’Reilly) Programming the Perl DBI: Database Programming with Perl by Descartes, Bunce, & Mui (Editor) (O’Reilly)
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PHP: Hypertext Preprocessor (PHP)
HTML embedding scripting language (see the PHP online manual When a browser calls a PHP document, the Server reads the PHP document and Runs the PHP code Returns the resulting HTML code to the browser Example (code)
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PHP Key Points (1) Filename must end in .php or .phtml
PHP code enclosed in <?php PHP code ?> or <? PHP code ?> Everything outside is HTML Output is (generally) to a browser requiring standard HTML
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PHP Key Points (2) Connecting with RDBMS and editing, adding, and deleting databases therein are all done through PHP functions Connect with MySQL RDBMS mysql_connect($hostName, $userName, $password) or die("Unable to connect to host $hostName"); Connect with database mysql_select_db($dbName) or die("Unable to select database $dbName");
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PHP Key Points (3) Queries: Nearly all table interaction and management is done through queries: Basic information searches $SQL = "SELECT FirstName, LastName, DOB, Gender FROM Patients WHERE Gender = '$Gender‘ ORDER BY FirstName DESC"; $Patients = mysql_query($SQL); Editing, adding, and deleting records and tables $SQL = "INSERT INTO Patients (FirstName, LastName) VALUES('$firstName', '$lastName')"; $Patients = mysql_query($SQL);
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PHP Key Points (4) Cleaning up: close the database connection
mysql_close();
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PHP/MySQL Security The same problems as PHP occur with Perl if you run it as a Perl or CGI script. See the passwords link
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PHP Resources ITC-Training Workshops PHP Documentation
PHP and MySQL PHP Documentation ITC-Desktop’s examples PHP’s Tutorial WebMonkey’s Tutorial PHP and MySQL Web Development by Welling & Thomson (SAMS) Beginning PHP4 by Blan, Choi, et. al (Wrox)
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(Other) Books MySQL by DuBois (New Riders)
MySQL and PERL for the Web by DuBois (New Riders) MySQL & mSQL byYarger, Reese, & King PHP and MySQL Web Development by Welling & Thomson (SAMS) Beginning PHP4 by Blan, Choi, et. al (Wrox) Learning Perl by Schwartz & Christiansen (O’Reilly) Programming Perl by Wall, Orwant, & Christiansen (O’Reilly) Programming the Perl DBI: Database Programming with Perl by Descartes, Bunce, & Mui (Editor) (O’Reilly) SQL-99 Complete, Really by Gulutzan & Pelzer (R&D Books) MySQL tools:
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