1. Tools and Services Workshop
Overview of CyVerse
Joslynn Lee – Data Science Educator
DNA Learning Center, Cold Spring Harbor Laboratory

2. CyVerse evolution From plant science, to life science, and beyond…
Transforming Science Through Data-Driven Discovery
iPlant 2008
Empowering a New Plant Biology
iPlant 2013
Cyberinfrastructure for Life Science

3. We are funded by the National Science Foundation
From plant science, to life science, and beyond…
Directorate for Biological Sciences
$100 Million in investment
We are your colleagues and collaborators
Freely available to the community
Spur national/international collaboration
Cite CyVerse:
CyVerse.org/acknowledge-cite-cyverse
DBI and DBI

4. Transforming Science Through Data-Driven Discovery
CyVerse evolution
From plant science, to life science, and beyond…
Vision:
Transforming science through data-driven discovery
Mission:
Design, develop, deploy, and expand a national cyberinfrastructure for life science research, and train scientists in its use
More than 30K users, PB of data, and hundreds of publications, courses, and discoveries
CyVerse 2016
Transforming Science Through Data-Driven Discovery
1024 bytes  =  1 KB
1024 KB  =  1 MB
1024 MB  =  1 GB
1024 GB  =  1 TB
1024 TB  =  1 PB

5. What is cyberinfrastructure?
CI provides solutions to the challenges of large-scale computational science were unapproachable because the computational requirements were too large, too complex, or simply unknown
Platforms, tools, datasets, Storage and compute Training and support
Software HPC People

6. CyVerse evolution
From plant science, to life science, and beyond…

7. CyVerse supports all domains of life science
From plant science, to life science, and beyond…
Plant / Microbial Animal Biomedical Ecological/Climate
CyVerse provides life scientists with powerful computational infrastructure to handle huge datasets and complex analyses

8. CyVerse supports all level of users
User perspectives and potential applications
Bench Scientist
Bioinformatician
Core Facilities
Welch et al. 2013

9. CyVerse collaborators
From plant science, to life science, and beyond…
Arabidopsis Information Portal
CyVerse collaborates to enable access to the solutions that work the best for you

10. CyVerse is a collaborative virtual organization
CyVerse institutions
From plant science, to life science, and beyond…
CyVerse is a collaborative virtual organization

11. CyVerse products Ease of Use Flexibility
From plant science, to life science, and beyond…
Ready to use Platforms
Extensible Services
Ease of Use
Flexibility
Established CI Components
Foundational Capabilities

12. CyVerse products Data Store Science APIs Discovery Environment Bisque
From plant science, to life science, and beyond…
Data Store
Science APIs
Discovery Environment
Bisque
Atmosphere
DNA Subway

13. Data Store
The resources you need to share and manage data with your lab, colleagues and community
Initial 1 TB allocation available
Automatic data backup
Easy upload /download and sharing

14. Discovery Environment
Hundreds of bioinformatics Apps in an easy-to-use interface
user interface for access to the tools and computing resources
Run existing bioinformatics software apps on CyVerse clusters or TACC supercomputers quickly, easily, and efficiently
User extensible – add your own applications
bioinformatics workflow—data management, analysis, sharing large datasets

15. Atmosphere Cloud computing for the life sciences
Simple: One-click access to more than 200 virtual machine images
Publish your own software suites, create your own work environments, and run the software for community use
access the CyVerse’s core infrastructure resources, including high performance computing (HPC), grid computing environments

16. Science APIs (Application Programming Interfaces)
Fully customize CyVerse resources
Science-as-a-service platform
Define your own compute, and storage resources (local and CyVerse)
Build your own app store of scientific codes and workflows and share with anyone (developers and bioinformaticians)

17. Bisque Image analysis, management, and metadata
Bio-Image Semantic Query User Environment
Secure image storage, analysis, and data management
Integrate existing applications or create new ones
100+ biological image formats

18. DNA Subway Educational workflows for Genomes, DNA Barcoding, RNA-Seq
Commonly used bioinformatics tools in streamlined workflows
Teach important concepts in biology and bioinformatics
Inquiry-based experiments for novel discovery and publication of data