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Traditional approach for bioactive natural product discovery fractionation extraction Investigate bioactivity of extract Identify active fraction(s) and.

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Presentation on theme: "Traditional approach for bioactive natural product discovery fractionation extraction Investigate bioactivity of extract Identify active fraction(s) and."— Presentation transcript:

1 Traditional approach for bioactive natural product discovery fractionation extraction Investigate bioactivity of extract Identify active fraction(s) and determine structure(s) of compound(s)

2 Genome sequence of the model antibiotic- producer Streptomyces coelicolor M145 Nature (2002) 417, 141-147

3 Cryptic biosynthetic pathways encoded within the S. coelicolor genome

4 DEBS – an archetypal cis-AT polyketide synthase Nature (1990) 348, 176; Science (1991) 252, 671

5 Posttranslational ACP modification CoASH

6 Acyl transferase

7 Prediction of AT domain substrate specificity Haydock et al. FEBS Lett. (1995) 374, 246-248 Banskota et al. J. Antibiot. (2006) 59, 168-176 Malonyl-CoA Methylmalonyl-CoA

8 Ketosynthase 1

9 Ketosynthase 2 -CO 2

10 Keto reductase NADPH

11 Prediction of KR domain stereospecificity Keatinge-Clay, Chem. Biol. (2007) 14, 898-908

12 Dehydratase -H 2 O

13 Enoyl reductase NADPH

14 Prediction of ER domain stereospecificity Kwan et al., Chem. Biol. (2008) 15, 1231-1240

15 Thioesterase 1

16 Thioesterase 2


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