UMCG/RuG BCN - NIC Journal club 25 Apr. ’08 A method for functional network connectivity among spatially independent resting-state components in schizophrenia.

Slides:



Advertisements
Similar presentations
Cluster Analysis of fMRI Data Using Dendrogram Sharpening L. Stanberry, R. Nandy, and D. Cordes Presenter: Abdullah-Al Mahmood.
Advertisements

Uncertainty and Information Integration in Biomedical Applications Claudia Plant Research Group for Bioimaging TU München.
Statistical Signal Processing for fMRI
Basics of fMRI Preprocessing Douglas N. Greve
MNTP Summer Workshop fMRI BOLD Response to Median Nerve Stimulation: A Comparison of Block and Event-Related Design Mark Wheeler Destiny Miller.
OverviewOverview Motion correction Smoothing kernel Spatial normalisation Standard template fMRI time-series Statistical Parametric Map General Linear.
Multi-Group Functional MRI Analysis Using Statistical Activation Priors Deepti Bathula, Larry Staib, Hemant Tagare, Xenios Papademetris, Bob Schultz, Jim.
Rapid Self-Paced Event- Related Functional MRI: Feasibility and Implications of Stimulus- versus Response- Locked Timing Maccotta, Zacks & Buckner, 2001.
fMRI data analysis at CCBI
UMCG/RuG BCN - NIC Journal club 6 Feb. ’09 Default mode network as revealed with multiple methods for resting-state functional MRI analysis Long et al.,
Introduction  Electroencephalography correlated functional Magnetic Resonance Imaging (EEG-fMRI) is a multi-modal imaging technique with growing application.
07/01/15 MfD 2014 Xin You Tai & Misun Kim
Dissociating the neural processes associated with attentional demands and working memory capacity Gál Viktor Kóbor István Vidnyánszky Zoltán SE-MRKK PPKE-ITK.
Application of Statistical Techniques to Neural Data Analysis Aniket Kaloti 03/07/2006.
Spatial preprocessing of fMRI data
Multiple comparison correction Methods & models for fMRI data analysis 29 October 2008 Klaas Enno Stephan Branco Weiss Laboratory (BWL) Institute for Empirical.
1 Haskins fMRI Workshop Part III: Across Subjects Analysis - Univariate, Multivariate, Connectivity.
Preprocessing II: Between Subjects John Ashburner Wellcome Trust Centre for Neuroimaging, 12 Queen Square, London, UK.
Connectivity of aMRI and fMRI data Keith Worsley Arnaud Charil Jason Lerch Francesco Tomaiuolo Department of Mathematics and Statistics, McConnell Brain.
General Linear Model & Classical Inference
TSTAT_THRESHOLD (~1 secs execution) Calculates P=0.05 (corrected) threshold t for the T statistic using the minimum given by a Bonferroni correction and.
From Localization to Connectivity and... Lei Sheu 1/11/2011.
Statistical Parametric Mapping Lecture 9 - Chapter 11 Overview of fMRI analysis Textbook: Functional MRI an introduction to methods, Peter Jezzard, Paul.
ERP DATA ACQUISITION & PREPROCESSING EEG Acquisition: 256 scalp sites; vertex recording reference (Geodesic Sensor Net)..01 Hz to 100 Hz analogue filter;
Intrinsic Neural Connectiity of ACT-R ROIs Yulin Qin 1, 2, Haiyan Zhou 1, Zhijiang Wang 1, Jain Yang 1, Ning Zhong 1, and John R. Anderson 2 1. International.
Preprocessing of FMRI Data fMRI Graduate Course October 23, 2002.
Resting state fMRI changes during Spinal Cord Stimulation Chima O.Oluigbo, MD, Amir Abduljalil, PhD, Xiangyu Yang, PhD, Andrew Kalnin, MD, Michael V. Knopp,
Research course on functional magnetic resonance imaging Lecture 2
Brain Innovation BVTurbo BrainVoyager Training Course January, 2011 Real-time Independent Component Analysis of functional MRI time-series A new TBV (3.0)
ANALYSIS OF fMRI DATA BASED ON NN-ARx MODELING Biscay-Lirio, R: Inst. of Cybernetics, Mathematics and Physics, Cuba Bosch-Bayard, J.: Cuban Neuroscience.
Development Virtual Environments for fMRI Socially to Interact with a virtual avatar ; a pilot study Hyeongrae, Lee Dept. of Biomedical Engineering, Hanyang.
Brain Mapping Unit The General Linear Model A Basic Introduction Roger Tait
Analysis of fMRI data with linear models Typical fMRI processing steps Image reconstruction Slice time correction Motion correction Temporal filtering.
Signal and noise. Tiny signals in lots of noise RestPressing hands Absolute difference % signal difference.
Purpose: Examine the reliability of functional MRI activation over time in schizophrenic outpatients and non- patients while they complete WM tasks. Examine.
Coregistration and Spatial Normalisation
FMRI Group Natasha Matthews, Ashley Parks, Destiny Miller, Ziad Safadi, Dana Tudorascu, Julia Sacher. Adviser: Mark Wheeler.
Network modelling using resting-state fMRI: effects of age and APOE Lars T. Westlye University of Oslo CAS kickoff meeting 23/
Functional Connectivity in an fMRI Working Memory Task in High-functioning Autism (Koshino et al., 2005) Computational Modeling of Intelligence (Fri)
Types of Scaling Session scaling; global mean scaling; block effect; mean intensity scaling Purpose – remove intensity differences between runs (i.e.,
You had it coming... Precursors of Performance Errors Tom Eichele, MD PhD Department of Biological and Medical Psychology University of Bergen Source:
FMRI Activation in a Visual- Perception Task: Network of Areas Detected Using the General Linear Model and Independent Components Analysis Calhoun, Adali,
Multimodal Neuroimaging Training Program
EXPERIMENT DESIGN  Variations in Channel Density  The original 256-channel data were downsampled:  127 channel datasets  69 channels datasets  34.
Data Preprocessing and Motion Correction The bulk of this demonstration will focus on ‘quality control’ measures. Standard processing procedure - Every.
Joint Sparse Representation of Brain Activity Patterns in Multi-Task fMRI Data 2015/03/21.
Correlation random fields, brain connectivity, and astrophysics Keith Worsley Arnaud Charil Jason Lerch Francesco Tomaiuolo Department of Mathematics and.
Functional Brain Signal Processing: EEG & fMRI Lesson 14
Spatial Smoothing and Multiple Comparisons Correction for Dummies Alexa Morcom, Matthew Brett Acknowledgements.
PharmaCog WP5 / E-ADNI. Enrollment and follow-ups Clinical sites Maximum Minimum PATIENTS EXPECTED.
EEG DATA EEG Acquisition: 256 scalp sites; vertex recording reference (Geodesic Sensor Net)..01 Hz to 100 Hz analogue filter; 250 samples/sec. EEG Preprocessing:
Methods for Dummies Second level Analysis (for fMRI) Chris Hardy, Alex Fellows Expert: Guillaume Flandin.
(Example) Class Presentation: John Desmond
Statistical Analysis An Introduction to MRI Physics and Analysis Michael Jay Schillaci, PhD Monday, April 7 th, 2007.
Methodological issues for scanning geriatric populations Andy James fMRI Journal Club October 12, 2004.
Baseline and longitudinal patterns of brain atrophy in MCI patients, and their use in prediction of Short- term conversion to AD: Results from ADNI Xuejiao.
BOLD functional MRI Magnetic properties of oxyhemoglobin and deoxyhemoglobin L. Pauling and C. Coryell, PNAS USA 22: (1936) BOLD effects in vivo.
Methods for Dummies M/EEG Analysis: Contrasts, Inferences and Source Localisation Diana Omigie Stjepana Kovac.
Surface-based Analysis: Intersubject Registration and Smoothing
Maxima of discretely sampled random fields
Dynamic Causal Model for evoked responses in M/EEG Rosalyn Moran.
Decoding Wakefulness Levels from Typical fMRI Resting-State Data Reveals Reliable Drifts between Wakefulness and Sleep  Enzo Tagliazucchi, Helmut Laufs 
miRNA expression patterns in stools from healthy subjects.
Resting-sate fMRI analyses of functional connectivity in the DMN in 2-week-old neonates in cohort 1. Resting-sate fMRI analyses of functional connectivity.
SPM2: Modelling and Inference
M/EEG Statistical Analysis & Source Localization
MfD 04/12/18 Alice Accorroni – Elena Amoruso
Fig. 1 Data analysis path. Overview of processing steps involved in preprocessing, time-series extraction, and statistical analyses. Note: preprocessed.
Fig. 1 Data analysis path. Overview of processing steps involved in preprocessing, time-series extraction, and statistical analyses. Note: preprocessed.
Fig. 2. Default mode network (DMN) patterns in each of the 3 groups and longitudinal changes after treatment. (A–C) ... Fig. 2. Default mode network (DMN)
Presentation transcript:

UMCG/RuG BCN - NIC Journal club 25 Apr. ’08 A method for functional network connectivity among spatially independent resting-state components in schizophrenia Jafri et al., NeuroImage 39 (2008)

BCN NIC Introduction Functional connectivity methods Seed-voxel functional connectivity mapping Independent component analysis Functional network connectivity: time dependence among ICA components Applicable to cognitive or motor tasks, or resting state Group comparisons Schizophrenia

BCN NIC Materials & Methods Subjects 29 schizophrenics 25 matched healthy controls Scanning 3.0-T GE-EPI fMRI TR = 1.86 s 162 acquisitions [!] Preprocessing Motion correction Spatial smoothing, FWHM = 10 mm [?] Normalization to MNI, conversion to T&T

BCN NIC Materials & Methods Group-sICA All subjects pooled, verified per group InfoMax algorithm 30 components extracted Temporal concatenation and back-reconstruction 7 components systematically [?] selected on the basis of correlations with CSF and GM

BCN NIC Results

BCN NIC Materials & Methods Correlation and lag analysis Band-pass filtering at f = Hz (i.e., T = s) Interpolation to higher time resolution [?] For each of 21 pairs of components, determined maximal correlation coefficient ρ and corresponding time lag δ (−5 s < δ < 5 s) Significant correlations extracted using t-test at p < 0.05 Group comparisons using conservative t-test at q < 0.05 Resampling by subsampling groups Resampling by relabeling groups

BCN NIC Results

BCN NIC Results 50% 60% 50% 55% 65% 70% 65%

BCN NIC Remarks Network connectivity methods are feasible Significant outcomes in individuals Significant differences between groups The method can be expanded SEM GCA EEG Statistics remain doubtful Can t-tests be performed on correlation coefficients ρ? How did corrections for multiple comparisons take place?