Robust Regularization for the Estimation of Intra-Voxel Axon Fiber Orientations Also presented at MMBIA Anchorage, Jun, 2008 Alonso Ramirez-Manzanares.

Slides:



Advertisements
Similar presentations
Corpus Callosum Damage Predicts Disability Progression and Cognitive Dysfunction in Primary-Progressive MS After Five Years.
Advertisements

Joint Detection-Estimation of Brain Activity in fMRI using Graph Cuts Thesis for the Master degree in Biomedical Engineering Lisbon, 30 th October 2008.
1 Challenge the future Multi-scale mining of fMRI data with hierarchical structured sparsity – R. Jenatton et al, SIAM Journal of Imaging Sciences, 2012.
1 Detecting Subtle Changes in Structure Chris Rorden –Diffusion Tensor Imaging Measuring white matter integrity Tractography and analysis.
In Chan Song, Ph.D. Seoul National University Hospital
NON-EXPONENTIAL T 2 * DECAY IN WHITE MATTER P. van Gelderen 1, J. A. de Zwart 1, J. Lee 1,3, P. Sati 1, D. S. Reich 1, and J. H. Duyn 1. 1 Advanced MRI.
1 Low-Dose Dual-Energy CT for PET Attenuation Correction with Statistical Sinogram Restoration Joonki Noh, Jeffrey A. Fessler EECS Department, The University.
MaxEnt 2007 Saratoga Springs, NY
Diffusion Tensor MRI And Fiber Tacking Presented By: Eng. Inas Yassine.
Oklahoma State University Generative Graphical Models for Maneuvering Object Tracking and Dynamics Analysis Xin Fan and Guoliang Fan Visual Computing and.
Giessen University Dept. of Psychology
Reproducibility of diffusion tractography E Heiervang 1,2, TEJ Behrens 1, CEM Mackay 3, MD Robson 3, H Johansen-Berg 1 1 Centre for Functional MRI of the.
DTI-Based White Matter Fiber Analysis and Visualization Jun Zhang, Ph.D. Laboratory for Computational Medical Imaging & Data Analysis Laboratory for High.
Master thesis by H.C Achterberg
Diffusion Physics H 2 O in the body is always in random motion due to thermal agitation B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen.
Motion Detail Preserving Optical Flow Estimation Li Xu 1, Jiaya Jia 1, Yasuyuki Matsushita 2 1 The Chinese University of Hong Kong 2 Microsoft Research.
J OHNS H OPKINS U NIVERSITY S CHOOL O F M EDICINE Statistically-Based Reorientation of Diffusion Tensor Field XU, D ONGRONG S USUMU M ORI D INGGANG S HEN.
Visual Odometry for Ground Vehicle Applications David Nister, Oleg Naroditsky, James Bergen Sarnoff Corporation, CN5300 Princeton, NJ CPSC 643, Presentation.
A neural mechanism for robust junction representation in the visual cortex University of Ulm Dept. of Neural Information Processing Thorsten Hansen and.
Bootstrapping a Heteroscedastic Regression Model with Application to 3D Rigid Motion Evaluation Bogdan Matei Peter Meer Electrical and Computer Engineering.
An Integrated Pose and Correspondence Approach to Image Matching Anand Rangarajan Image Processing and Analysis Group Departments of Electrical Engineering.
Rician Noise Removal in Diffusion Tensor MRI
A stepwise approximation for estimations of multilevel hydraulic tests in heterogeneous aquifers PRESENTER: YI-RU HUANG ADVISOR: CHUEN-FA NI DATE:
Face Alignment Using Cascaded Boosted Regression Active Shape Models
Transfer Learning From Multiple Source Domains via Consensus Regularization Ping Luo, Fuzhen Zhuang, Hui Xiong, Yuhong Xiong, Qing He.
Benoit Scherrer, ISBI 2010, Rotterdam Why multiple b-values are required for multi-tensor models. Evaluation with a constrained log- Euclidean model. Benoit.
Simulation Of A Cooperative Protocol For Common Control Channel Implementation Prepared by: Aishah Thaher Shymaa Khalaf Supervisor: Dr.Ahmed Al-Masri.
Benoit Scherrer, ISBI 2011, Chicago Toward an accurate multi-fiber assessment strategy for clinical practice. Benoit Scherrer, Simon K. Warfield.
NA-MIC National Alliance for Medical Image Computing Validation of DTI Analysis Guido Gerig, Clement Vachet, Isabelle Corouge, Casey.
NA-MIC National Alliance for Medical Image Computing NAMIC UNC Site Update Site PI: Martin Styner Site NAMIC folks: Clement Vachet, Gwendoline.
References: [1]S.M. Smith et al. (2004) Advances in functional and structural MR image analysis and implementation in FSL. Neuroimage 23: [2]S.M.
December 9, 2014Computer Vision Lecture 23: Motion Analysis 1 Now we will talk about… Motion Analysis.
Bayesian evidence for visualizing model selection uncertainty Gordon L. Kindlmann
Luke Bloy1, Ragini Verma2 The Section of Biomedical Image Analysis
Analytic ODF Reconstruction and Validation in Q-Ball Imaging Maxime Descoteaux 1 Work done with E. Angelino 2, S. Fitzgibbons 2, R. Deriche 1 1. Projet.
Fiber Demixing with the Tensor Distribution Function avoids errors in Fractional Anisotropy maps Liang Zhan 1,Alex D. Leow 2,3, Neda Jahanshad 1, Arthur.
Effective Optical Flow Estimation
Sharpening Improves Clinically Feasible Q-Ball Imaging Reconstructions
Raquel A. Romano 1 Scientific Computing Seminar May 12, 2004 Projective Geometry for Computer Vision Projective Geometry for Computer Vision Raquel A.
Functional Brain Signal Processing: EEG & fMRI Lesson 14
BMI2 SS08 – Class 7 “functional MRI” Slide 1 Biomedical Imaging 2 Class 7 – Functional Magnetic Resonance Imaging (fMRI) Diffusion-Weighted Imaging (DWI)
1 Identifying Robust Activation in fMRI Thomas Nichols, Ph.D. Assistant Professor Department of Biostatistics University of Michigan
NA-MIC National Alliance for Medical Image Computing NAMIC UNC Site Update Site PI: Martin Styner UNC Site NAMIC folks: C Vachet, G Roger,
Fast Least Squares Migration with a Deblurring Filter Naoshi Aoki Feb. 5,
NA-MIC National Alliance for Medical Image Computing UNC/Utah-II Core 1 Guido Gerig, Casey Goodlett, Marcel Prastawa, Sylvain Gouttard.
Geodesic image regression with a sparse parameterization of diffeomorphisms James Fishbaugh 1 Marcel Prastawa 1 Guido Gerig 1 Stanley Durrleman 2 1 Scientific.
Data analysis steps Pre-process images to reduce distortions
Martina Uray Heinz Mayer Joanneum Research Graz Institute of Digital Image Processing Horst Bischof Graz University of Technology Institute for Computer.
Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation Rendong Yang and Zhen Su Division of Bioinformatics,
Microstructure Imaging Sequence Simulation Toolbox
Zeyu You, Raviv Raich, Yonghong Huang (presenter)
Introduction to diffusion MRI
Introduction to diffusion MRI
Computer Vision, Robotics, Machine Learning and Control Lab
Learning Software Behavior for Automated Diagnosis
Compositional Human Pose Regression
Collective Network Linkage across Heterogeneous Social Platforms
Introduction to diffusion MRI
Combining COSMOS and Microwave Satellite Data
Human Brain Mapping Conference 2003 # 653
Contrasts & Statistical Inference
Signal and Noise in fMRI
Jamming Resistant Encoding
3T-versus-7T DTI with 36 diffusion-encoding directions at b = 3000 s/mm2 and 2.0 × 2.0 × 2.0 mm isotropic voxel resolution. 3T-versus-7T DTI with 36 diffusion-encoding.
Whitening-Rotation Based MIMO Channel Estimation
Finding Periodic Discrete Events in Noisy Streams
FOCUS PRIOR ESTIMATION FOR SALIENT OBJECT DETECTION
Utah Algorithms Progress and Future Work
Contrasts & Statistical Inference
Presentation transcript:

Robust Regularization for the Estimation of Intra-Voxel Axon Fiber Orientations Also presented at MMBIA Anchorage, Jun, 2008 Alonso Ramirez-Manzanares (PICSL) Hui Zhang (PICSL) Mariano Rivera (CIMAT) James C. Gee (PICSL)

Overview Motivation Statement of the problem Our Proposal Results for in-vivo human data Results for synthetic data Conclusions

MOTIVATION

Motivation (1/3): Intra-voxel fiber orientations. Behrens et al, Neuroimage'07 “We detect complex fibre architecture in approximately a third of voxels with an FA greater than 0.1” DT Multi-DTs

Motivation (2/3): The noisy orientations Because of: - acquisition noise - a reduced # of diffusion encoding orientations (clinical applications)‏ - patient movement

Motivation(3/3): Data averaging and Spatial integration From web site: In our case:

THE PROBLEM

The Problem (1/2): The spatial regularization of directional fields This is a well- known task, for instance, in Optical Flow computation.

The Problem (2/2): The spatial regularization of multi-fiber orientation fields. Problems: a) The need to regularize orientations (not directions)‏ b) The need to match orientations c) The need to use indicator variables of the number of bundles d) The subtle axon fiber structures

OUR PROPOSAL

Proposal(1/5): Observation model, Diffusion Basis Function (DBF) approach. Ramirez-Manzanares et al. IEEE-TMI '07 Tuch et al, MRM '02 Tensor Basis DBFs

Proposal(2/5): The robust spatial regularization term Inspired in statistical robust regression

Proposal(3/5): The robust spatial regularization term Indicator variables Robust Weights Robust regularization

Proposal(4/5): Single DT as a diffusivity profile constraint Plausible Implausible solution solution

Proposal(5/5): The Integration of terms and methods Data and contrast term Ramirez-Manzanares et al TMI’07

RESULTS FOR IN-VIVO HUMAN DATA

Results(1/6): In-vivo human data (b=1000, 60 DWI)‏ Non-Regularized Robust Regularized

Results(2/6): In-vivo human data, a closer view Non-Regularized Robust Regularized DT

Results(3/6): In-vivo human data, a closer view Non-Regularized Robust Regularized DT

RESULTS FOR SYNTHETIC DATA

Results(4/6): Synthetic data Robust Regularized Iteration 1 Robust weights Iteration 1 Robust weights Iteration 3 Non Regularized DT Robust Regularized Iteration 3

Results(5/6): Realistic/complex synthetic data Ground truth non-Regularized SNR=20 DT Iteration 1 Iteration 2 Iteration 3

Results(6/7): Synthetic data, quantitative results

Results(7/7): Comparison: Robust vs. non-Robust Non-Robust Regularized Ramirez-Manzanares et al TMI’07 Robust Regularized

Conclusions

Thank you for your attention! Questions?