 Dynamic Energy Budget Theory - I Tânia Sousa with contributions from :Bas Kooijman.

Slides:



Advertisements
Similar presentations
Dynamic Energy Budget Theory - I Tânia Sousa with contributions from :Bas Kooijman.
Advertisements

AP Ch 1 Learning Targets. LT #2-3 Characteristics of Life Movement - self initiated change in position, motion of internal parts Responsiveness (irritability)
Chem 1A Chapter 3 Lecture Outlines
DEB theory as a Paradigm for the Integration of Thermodynamics with the Natural and the Social Sciences Tiago Domingos Tania Sousa Environment and Energy.
Calculations with Chemical Formulas and Equations
Chapter 3 Dynamic Modeling.
 Dynamic Energy Budget Theory Tânia Sousa with contributions from :Bas Kooijman.
 Dynamic Energy Budget Theory - I Tânia Sousa with contributions from :Tjalling Yager & Bas Kooijman.
Dynamic Energy Budget theory 1 Basic Concepts 2 Standard DEB model 3 Metabolism 4 Univariate DEB models 5 Multivariate DEB models 6 Effects of compounds.
Mechanistic modeling of zebrafish metabolism in relationship to food level and the presence of a toxicant (uranium) S. Augustine B.Gagnaire C. Adam-Guillermin.
Dynamic Energy Budget (DEB) theory by Elke, Svenja and Ben.
Energetics & Stoichiometry of plankton production Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
The effect of food composition on feeding, growth and reproduction of bivalves Sofia SARAIVA 1,3, Jaap VAN DER MEER 1,2, S.A.L.M. KOOIJMAN 2, T. SOUSA.
Chemical Stoichiometry Reacting Quantities and Material Balance Edward A. Mottel Department of Chemistry Rose-Hulman Institute of Technology.
Tjalling Jager Dept. Theoretical Biology How to simplify biology to interpret effects of stressors.
1-  maturity maintenance maturity offspring maturation reproduction Basic DEB scheme foodfaeces assimilation reserve feeding defecation structure somatic.
Estimation of DEB parameters Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Tjalling Jager molecular genetics evolutionary ecology dynamic energy budgets Mechanisms behind life- history trade-offs.
Lecture 3 Implications of theory. Mass & energy balance The standard DEB model specifies fluxes of 4 organic compounds food, faeces, stucture (growth),
DEB theory as framework for quantifying effects of noise on cetaceans Bas Kooijman Dept Theoretical Biology Washington, 2004/03/05.
From molecules to populations energy budgets in the causality of toxic effects Tjalling Jager Dept. Theoretical Biology.
Estimation of DEB parameters Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Elke Zimmer, PhD-Project DEB-1 Supervisors: Tjalling Jager, Bas Kooijman (VU Amsterdam) Co-Supervisor: Virginie Ducrot (INRA, Rennes) Elke Zimmer CREAM.
DEB-based body mass spectra
Population consequences of individual-level mechanisms through dynamic energy budgets Tjalling Jager Dept. Theoretical Biology.
1-  maturity maintenance maturity offspring maturation reproduction Basic DEB scheme foodfaeces assimilation reserve feeding defecation structure somatic.
Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam The dynamics of isotopes.
Modelkey: VUA-TB, WP Effect-3 Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Application of DEB theory to a particular organism in (hopefully somewhat) practical terms Laure Pecquerie University of California Santa Barbara.
Chemical Stoichiometry Reacting Quantities and Material Balance Edward A. Mottel Department of Chemistry Rose-Hulman Institute of Technology.
Standard DEB model summary of tele-part of DEB course 2011 Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Lecture 2 Standard DEB model. 1-  maturity maintenance maturity offspring maturation reproduction Standard DEB model foodfaeces assimilation reserve.
Effects of combined stressors Tjalling Jager, Bas Kooijman Dept. Theoretical Biology From individuals to population using dynamic energy budgets.
1-  maturity maintenance maturity offspring maturation reproduction Standard DEB model foodfaeces assimilation reserve feeding defecation structure somatic.
Making sense of sub-lethal mixture effects Tjalling Jager, Tine Vandenbrouck, Jan Baas, Wim De Coen, Bas Kooijman.
From developmental energetics to effects of toxicants: a story born of zebrafish and uranium S. Augustine B.Gagnaire C. Adam-Guillermin S. A. L. M. Kooijman.
Introduction to Anatomy and Physiology. Definitions  Anatomy- the structure of body parts (also called morphology)  Physiology- the function of body.
Input + Generation = Output + Consumption
Dynamic Energy Budget Theory Scientific Context and Structure Tiago Domingos Environment and Energy Scientific Area Department of.
Study of Biology. What is Biology? Biology is the study of all living things Living things are called organisms Living things are called organisms Organisms.
Theoretical Ecology course 2015 DEB theory Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Unit 12 Mass and Moles.
Lecture 6: Product Formation Stoichiometry
What is DEB theory? Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Melbourne 2012/08/06.
Chapter 3: Matter, Energy and Life Lecture #1 Part II Biosphere Breakdown & Energy Flow.
Objectives To learn to identify the characteristics of a chemical reaction To learn the information given by a chemical equation =
Modelling the PCB bioaccumulation in the hake (Merluccius merluccius) from the Gulf of Lions (Mediterranean sea) X. Bodiguel 1, V. Loizeau 1, C. Mellon.
CHE 205 $200 $400 $600 $800 $1000 Stoichiometry Reactive Systems Flowcharts and DOF BalancesEmpty $600 $1000.
DYNAMIC BEHAVIOR OF PROCESSES :
Mass aspects & scaling Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Melbourne 2012/08/06 Contents.
MOL Concept Warmups. 1. The gram-formula mass of a compound is 48 grams. The mass of 1.0 mole of this compound is – A. 1.0 g B. 4.8 g C. 48 g D. 480 g.
Section 7.2 Chemical Equations 1.To learn to identify the characteristics of a chemical reaction 2.To learn the information given by a chemical equation.
Dina Lika Dept of Biology TexPoint fonts used in EMF. Read the TexPoint manual before you delete this box.: AAA The covariation method of estimation Add_my_pet.
 Dynamic Energy Budget Theory - I Tânia Sousa with contributions from :Bas Kooijman.
Chapter 12 Stoichiometry. Composition Stoichiometry – mass relationships of elements in compounds Reaction Stoichiometry – mass relationships between.
 Microbial Cell Factories Tânia Sousa with contributions from :Bas Kooijman Gonçalo Marques.
Limiting Reactants, Theoretical Yield, and % Yield.
 Calculate empirical formula from mass percent :  Find the molecular formula of a compound has 20 % H, 80 % C, if its Mw = 30 g/mol.
Dina Lika Dept of Biology TexPoint fonts used in EMF. Read the TexPoint manual before you delete this box.: AAA Covariation of parameter values UNIVERSITY.
 Dynamic Energy Budget Theory Tânia Sousa with contributions from : Gonçalo Marques and Bas Kooijman.
Dynamic energy budgets in individual based population models
Dynamic Energy Budget Theory
The DEB-theory and its applications in Ecotoxicology
Olivier Maury, Olivier Aumont, Jean-Christophe Poggiale
Atomic Mass Unit: amu (atomic mass unit) amu is defined as a mass exactly equal to on-twelfth the mass of Carbon-12 atom amu = 1/12 of carbon-12 Hydrogen.
Modelling the PCB bioaccumulation in the hake (Merluccius merluccius) from the Gulf of Lions (Mediterranean sea) X. Bodiguel1, V. Loizeau1, C. Mellon2,
Dynamic Energy Budget theory
The scaling of metabolism in the perspective of DEB theory
DEB applications for Aquaculture
Properties of Life Bio with Mr. D..
Presentation transcript:

 Dynamic Energy Budget Theory - I Tânia Sousa with contributions from :Bas Kooijman

  Metabolism in a DEB individual.  Rectangles are state variables  Arrows are flows of food J XA, reserve J EA, J EC, J EM, J ET, J EG, J ER, J EJ or structure J VG.  Circles are processes  The full square is a fixed allocation rule (the kappa rule)  The full circles are the priority maintenance rule. A DEB organism Assimilation, dissipation and growth M V - Structure Feeding M H - Maturity Assimilation M E - Reserve Mobilisation Offspring M ER Somatic Maintenance Growth Maturity Maintenance Reproduction Maturation

  Assimilation : X(substrate)+M  E(reserve) + M + P  linked to surface area  Dissipation : E(reserve) +M  M  somatic maintenance: linked to surface area & structural volume  maturity maintenance: linked to maturity  maturation or reproduction overheads  Growth : E(reserve)+M  V(structure) + M  Compounds :  Organic compounds: V, E, X and P  Mineral compounds: CO 2, H 2 O, O 2 and N waste 3 types of aggregated chemical transformations

  Identify in these equations y XE, y PE and y EV.  Constraints on the yield coeficients  Degrees of freedom Exercises

  Identify in these equations y XE, y PE and y EV.  Constraints on the yield coeficients  Degrees of freedom  Obtain the aggregated chemical reactions for assimilation, dissipation and growth considering that the chemical compositions are: food CH 1.8 O 0.5 N 0.2, reserve CH 2 O 0.5 N 0.15, faeces CH 1.8 O 0.5 N 0.15, structure CH 1.8 O 0.5 N 0.15 and NH 3. Exercises

  Identify in these equations y XE, y PE and y EV.  Constraints on the yield coeficients  Degrees of freedom  Obtain the aggregated chemical reactions for assimilation, dissipation and growth considering that the chemical compositions are: food CH 1.8 O 0.5 N 0.2, reserve CH 2 O 0.5 N 0.15, faeces CH 1.8 O 0.5 N 0.15, structure CH 1.8 O 0.5 N 0.15 and NH 3.  How would you obtain the aggregate chemical transformation? Exercises

  The stoichiometry of the aggregate chemical transformation that describes the organism has 3 degrees of freedom: any flow produced or consumed in the organism is a weighted average of any three other flows

  Write the energy balance for each chemical reactor (assimilation, dissipation and growth) Exercises

  Indirect calorimetry (estimating heat production without measuring it): Dissipating heat is weighted sum of three mass flows: CO 2, O 2 and nitrogeneous waste (Lavoisier in the XVIII century).

 Dissipating heat Steam from a heap of moist Prunus serotina litter illustrates metabolic heat production by fungi

 Exercises

  Obtain an expression for the dynamics of the reserve density m E  Set dm E /dt=0 (weak homeostasis).  What is the maximum value of m E ? Exercises

  Obtain an expression for the dynamics of the reserve density m E  Set dm E /dt=0 (weak homeostasis).  What is the maximum value of m E ?  Can you understand the meaning?  What is the value for m E in weak homeostasis? Exercises

  Obtain an expression for the dynamics of the reserve density m E  Set dm E /dt=0 (weak homeostasis).  What is the maximum value of m E ?  Can you understand the meaning?  What is the value for m E in weak homeostasis? Exercises