Corpus Callosum Probabilistic Subdivision based on Inter-Hemispheric Connectivity May 2005, UNC Radiology Symposium Original brain images for the corpus.

Slides:



Advertisements
Similar presentations
Brain Structures Differ between Musicians and Non-Musicians
Advertisements

1 Detecting Subtle Changes in Structure Chris Rorden –Diffusion Tensor Imaging Measuring white matter integrity Tractography and analysis.
National Alliance for Medical Image Computing Diffusion Weighted MRI.
NA-MIC National Alliance for Medical Image Computing DTI Atlas Registration via 3D Slicer and DTI-Reg Martin Styner, UNC Guido Gerig,
NAMIC: UNC – PNL collaboration- 1 - October 7, 2005 Fiber tract-oriented quantitative analysis of Diffusion Tensor MRI data Postdoctoral fellow, Dept of.
Anatomy What is the difference between Structural Anatomy and Functional Anatomy? What roles do each play in our understanding of the brain?
Reproducibility of diffusion tractography E Heiervang 1,2, TEJ Behrens 1, CEM Mackay 3, MD Robson 3, H Johansen-Berg 1 1 Centre for Functional MRI of the.
DTI-Based White Matter Fiber Analysis and Visualization Jun Zhang, Ph.D. Laboratory for Computational Medical Imaging & Data Analysis Laboratory for High.
Age and treatment related local hippocampal changes in schizophrenia explained by a novel shape analysis method 1,2 G Gerig, 3 K Muller, 3 E Kistner, 3.
New quantitative analysis of high-field 3T MRI/DTI to assess neonatal brain development 1,2 G Gerig, 2 Pierre Fillard, 2 M Prastawa, 3 W Lin, 1 John Gilmore,
Sponsor: Prof. Sidney Spector Computational anatomy to assess growth pattern of early brain development in healthy and disease populations Guido Gerig.
Corpus Callosum Segmentation Tool Project Martin Styner Department of Computer Science & Psychiatry Neuro Image Analysis Laboratory.
Preliminary Results Longitudinal Change Conclusions Acknowledgements The most striking result of the longitudinal growth analysis between 2 and 4 years.
12-Apr CSCE790T Medical Image Processing University of South Carolina Department of Computer Science 3D Active Shape Models Integrating Robust Edge.
Diffusion Tensor Imaging (DTI) is becoming a routine technique to study white matter properties and alterations of fiber integrity due to pathology. The.
Computer-Aided Diagnosis and Display Lab Department of Radiology, Chapel Hill UNC Julien Jomier, Erwann Rault, and Stephen R. Aylward Computer.
Li Wang, Yaozong Gao, Feng Shi, Gang Li, Dinggang Shen
NAMIC: UNC – PNL collaboration- 1 - October 7, 2005 Quantitative Analysis of Diffusion Tensor Measurements along White Matter Tracts Postdoctoral fellow,
The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL FADTTS: Functional Analysis of Diffusion Tensor Tract Statistics Hongtu Zhu, Ph.D. Department of Biostatistics.
Li Wang1, Feng Shi1, Gang Li1, Weili Lin1, John H
Dagstuhl-Seminar, April 18-23, 2004 Some Developments in DT-MRI Registration and Visualization James Gee, Hui Zhang, Jeffrey Duda, Paul Yushkevich, Brian.
NA-MIC National Alliance for Medical Image Computing DTI atlas building for population analysis: Application to PNL SZ study Casey Goodlett,
AUTOMATIC CLUSTER ANALYSIS OF CORPUS CALLOSUM SUBDIVISIONS IN SCHIZOPHRENIA: A DIFFUSION TENSOR IMAGING STUDY Background: The corpus callosum is a major.
Vascular Attributes and Malignant Brain Tumors MICCAI November 2003 CONCLUSIONS References: [1] Aylward S, Bullitt E (2002) Initialization, noise, singularities.
Diffusion-Tensor Imaging Tractography: Correlation with Processing Speed in Aging Stephen Correia 1, Stephanie Y. Lee 2, Song Zhang 2, Stephen P. Salloway.
Automatic Brain Segmentation in Rhesus Monkeys February 2006, SPIE Medical Imaging 2006 Funding provided by UNC Neurodevelopmental Disorders Research Center.
OPTIMIZATION OF FUNCTIONAL BRAIN ROIS VIA MAXIMIZATION OF CONSISTENCY OF STRUCTURAL CONNECTIVITY PROFILES Dajiang Zhu Computer Science Department The University.
Comparative Diffusion Tensor Imaging (DTI) Study of Tool Use Pathways in Humans, Apes and Monkeys Ashwin G. Ramayya 1,2, Matthew F. Glasser 1, David A.
(Pre-)Clinical and Applications with DTI
NA-MIC National Alliance for Medical Image Computing Core 1 & Core 3 Projects.
NA-MIC National Alliance for Medical Image Computing Shape Analysis and Cortical Correspondence Martin Styner Core 1 (Algorithms), UNC.
Functional-anatomical correspondence Meta-analysis of motor and executive fMRI/PET activations showed close correspondence between functionally and connectivity-defined.
Functional Connectivity in an fMRI Working Memory Task in High-functioning Autism (Koshino et al., 2005) Computational Modeling of Intelligence (Fri)
NA-MIC National Alliance for Medical Image Computing DTI Atlas Registration via 3D Slicer and DTI-Reg Martin Styner, UNC Clement Vachet,
NA-MIC National Alliance for Medical Image Computing ABC: Atlas-Based Classification Marcel Prastawa and Guido Gerig Scientific Computing.
NA-MIC National Alliance for Medical Image Computing Validation of DTI Analysis Guido Gerig, Clement Vachet, Isabelle Corouge, Casey.
NA-MIC National Alliance for Medical Image Computing NAMIC UNC Site Update Site PI: Martin Styner Site NAMIC folks: Clement Vachet, Gwendoline.
DTI Quality Control Assessment via Error Estimation From Monte Carlo Simulations February 2013, SPIE Medical Imaging 2013 MC Simulation for Error-based.
NCBC EAB, January 2010 NA-MIC Highlights: A Core 1 Perspective Ross Whitaker University of Utah National Alliance for Biomedical Image Computing.
References: [1]S.M. Smith et al. (2004) Advances in functional and structural MR image analysis and implementation in FSL. Neuroimage 23: [2]S.M.
NA-MIC National Alliance for Medical Image Computing A longitudinal study of brain development in autism Heather Cody Hazlett, PhD Neurodevelopmental.
Statistical Group Differences in Anatomical Shape Analysis using Hotelling T 2 metric February 2006, SPIE Medical Imaging 2006 Funding provided by UNC.
INTRODUCTION Chronic pain is associated with cortical functional, neurochemical and morphological changes (Grachev et al., 2002, Apkarian et al., 2004).
UNC Shape Analysis Pipeline
Ventricular shape of monozygotic twins discordant for schizophrenia reflects vulnerability 2 M Styner, 1,2 G Gerig, 3 DW Jones, 3 DR Weinberger, 1 JA Lieberman.
NA-MIC National Alliance for Medical Image Computing Diffusion Tensor Imaging tutorial Sonia Pujol, PhD Surgical Planning Laboratory.
NA-MIC National Alliance for Medical Image Computing UNC Core 1: What did we do for NA-MIC and/or what did NA-MIC do for us Guido Gerig,
Lateralized change of ventricular shape in monozygotic twins discordant for schizophrenia 2 M Styner, 1,2 G Gerig, 3 DW Jones, 3 DR Weinberger, 1 JA Lieberman.
NA-MIC National Alliance for Medical Image Computing NA-MIC UNC Guido Gerig, Martin Styner, Isabelle Corouge
NA-MIC National Alliance for Medical Image Computing NAMIC UNC Site Update Site PI: Martin Styner UNC Site NAMIC folks: C Vachet, G Roger,
Automatic pipeline for quantitative brain tissue segmentation and parcellation: Experience with a large longitudinal schizophrenia MRI study 1,2 G Gerig,
Integrity of white matter in the corpus callosum correlates with bimanual co-ordination skill Heidi Johansen-Berg 1, Valeria Della-Maggiore 3, Steve Smith.
Subjects are registered to a template using affine transformations. These affine transformations are used to align the tracts passing through the splenium.
NA-MIC National Alliance for Medical Image Computing A longitudinal study of brain development in autism Heather Cody Hazlett, PhD Neurodevelopmental.
NA-MIC National Alliance for Medical Image Computing A longitudinal study of brain development in autism Heather Cody Hazlett, PhD Neurodevelopmental.
Statistical Shape Analysis of Multi-object Complexes June 2007, CVPR 2007 Funding provided by NIH NIBIB grant P01EB and NIH Conte Center MH
NA-MIC National Alliance for Medical Image Computing UNC/Utah-II Core 1 Guido Gerig, Casey Goodlett, Marcel Prastawa, Sylvain Gouttard.
CEREBRUM Dr. Jamila EL Medany. Objectives At the end of the lecture, the student should be able to:  List the parts of the cerebral hemisphere (cortex,
Department of Psychiatry, Department of Computer Science, 3 Carolina Institute for Developmental Disabilities 1 Department of Psychiatry, 2 Department.
Data analysis steps Pre-process images to reduce distortions
NA-MIC National Alliance for Medical Image Computing Analysis and Results of Brockton VA study: Controls vs Schizophrenics Personality Disorder Martin.
Asymmetric Bias in User Guided Segmentations of Subcortical Brain Structures May 2007, UNC/BRIC Radiology 2007 Funding provided by UNC Neurodevelopmental.
NA-MIC National Alliance for Medical Image Computing NAMIC Core 3.1 Overview: Harvard/BWH and Dartmouth Structural and Functional Connectivity.
Corpus Callosum Probabilistic Subdivision based on Inter-Hemispheric Connectivity Martin Styner1,2, Ipek Oguz1, Rachel Gimpel Smith2, Carissa Cascio2,
DIFFUSION ABNORMALITY OF CORPUS CALLOSUM IN ALZHEIMER’S DISEASE
Subjects and image data
Neuroimaging Schizophrenia and Related Disorders
Network hubs in the human brain
SYSTEMATIC REVIEW OF COMPUTATIONAL MODELS FOR BRAIN PARCELLATION
Presentation transcript:

Corpus Callosum Probabilistic Subdivision based on Inter-Hemispheric Connectivity May 2005, UNC Radiology Symposium Original brain images for the corpus callosum were provided by BIOMORPH consortium (EU BIOMED 2) and the UNC Autism center REFERENCES [1]. Fillard, P., Gilmore, J., Lin, W., Piven, J., Gerig, G.: Quantitative analysis of white matter fiber properties along geodesic paths. MICCAI in Lecture Notes in Computer Science (2003) 16–23 [2]. Xu, D., Mori, S., Solaiyappan, M., van Zijl, P., Davatzikos, C.: A framework for callosal fiber distribution analysis. NeuroImage 17 (2002) [3]. Gee, J., Zhang, H., Dubb, A., Avants, B., Yushkevich, P., Duda, J.: Anatomy-based visualizations of diffusion tensor images of brain white matter. Vis. and Image Processing of Tensor Fields. (2005) [4]. Witelson, S.: Hand and sex differences in the isthmus and genu of the human corpus callosum. a postmortem morphological study. Brain 3 (1989) 799–835 [5]. Narr, K., Thompson, P., Sharma, T., Moussai, J., Cannestra, A., Toga, A.: Mapping morphology of the corpus callosum in schizophrenia. Cereb Cortex 1 (2000) 40–9 Methods/Data/Material Fig. 2: Left: Midsagittal MR slices and the automatically segmented corpus callosum using deformable shape models. Middle: 3D view of the lobe subdivision (yellow=frontal, purple=parietal, red=occipital, green=temporal lobe). Right: Set of inter-hemispheric connectivity from a sample DTI dataset. Shape analysis and Diffusion Tensor Image (DTI) tractography have become of increasing interest in neuroimaging. Here both are employed to compute a probabilistic subdivision model of the Corpus Callosum (CC) structure. The CC subdivision allows us to study the regional CC morphology regarding area measurements or Diffusion Tensor Imaging properties. As a first small scale application, we applied it to a small study of regional CC growth in pediatric healthy controls. Our subdivision is based on a training population of 5 pediatric cases (age 2-4y). We first compute for each case the automatic lobe subdivision and CC segmentation. The CC is segmented as a 2D contour on the midsagittal plane based on a deformable shape model trained on over 200 cases (both adult and pediatric). The lobe subdivision uses a fluid deformable registration of a pediatric lobe atlas to all cases The corpus callosum (CC) is the major commissural pathway between the hemispheres and plays an integral role in relaying sensory, motor and cognitive information from homologous region in the two hemispheres. It is of much interest in neuroimaging studies of normal development, schizophrenia and autism. The computation of CC regional areas is most commonly executed manually by relabeling an already segmented structure into subregions. These manual methods are time- consuming, not reproducible and subjective. The currently most widely applied subdivision scheme for the CC was originally proposed by Witelson[4] and is motivated by neuro-histological studies. We propose a novel automatic CC subdivision based on probabilistic boundaries based on inter-hemispheric connectivity from Diffusion Tensor Imaging[1] (DTI). Introduction Martin Styner 1,2, Ipek Oguz 1, Rachel Gimpel Smith 2, Carissa Cascio 2, Matthieu Jomier 1 1 Department of Computer Science, University of North Carolina at Chapel Hill, 2 Department of Psychiatry, University of North Carolina at Chapel Hill Fig. 1: Corpus callosum in an MR image (left) with Witelson subdivision[5] and its neuro- histological motivation (right). This subdivision scheme is sensitive to alignment and/or manual labeling. In-vivo assessment of the inter-hemispheric pathways through the CC is difficult, but can be approximated using DTI and Tractography[2,3]. The lobe subdivision serves as an initialization for the DTI Tractography. This leads to a set of inter-hemispheric DTI fiber tracts for each lobe set. In the next step we compute a distance-weighted probabilistic subdivision of the CC contour from the location of all tracts. The resulting subdivisions are averaged to produce the final CC subdivision model consisting of probabilistic contour maps that assign to each contour point the probabilities to belong to any of the connectivity based subdivisions. The probabilities are propagated to the whole CC object using a Danielsson distance transform based label map. Our method is fully automatic and its results are more stable than commonly applied schemes such as the Witelson subdivision. Fig. 5:Relative growth curves of CC subdivision regions. Data from 3 healthy subjects along mean curves from age 2 to age 4. A: Regional growth relative to the overall CC growth. B: Regional growth relative to the size of the corresponding region at age 2. Fig. 4: Left: Final probabilistic subdivision model. Right: Sample subdivision case with relative area noted below. Fig. 3: Left: Fibers of 4 selected lobes transformed back to MR image space. Middle: Schematic visualization of probability computation. Right: Contour probability maps of 5 training cases. Average Probabilistic Contour Model Results The probability maps of all 5 cases in the training population show a high similarity across all cases and the subdivision model. The largest variability is present in the occipital-temporal lobe section. Alternatively, we also computed the hard decision maps, which resulted in a high decision variability in all cases and the final probability map. The application of the subdivision model shows that the occipital-temporal lobe region has a low probability in a relatively large region. The resulting probabilistic area is relatively large (21% for the shown case). A hard decision model would highly underestimate this area. The subdivision was applied to a small study of CC growth in 3 healthy subjects from age 2 to 4. The results show CC growth over its full length, and its main growth in the region associated with anterior frontal lobe connections. This region experienced a relative growth of 26% (posterior- frontal:24%, parietal:15%, occipital-temporal:15%). Conclusions We developed a novel probabilistic CC subdivision based on inter- hemispheric connectivity. Applied to a study of healthy growth from age 2 to 4, we showed that the main growth is in CC regions associated with frontal lobe connections.