The Uniform Resource Layer Anita Bandrowski Neuroscience Information Framework

Resource? …websites that have significant value to the greater neuroscience community, including biomedical resources. For the most part, these are limited to not-for-profit. It shall be considered an individual resource if it is maintained by a single entity, and has the properties of one or more individual web pages that are related by a theme and HTML links. Most often the individual pages share portions of the URL, however, unrelated URLs may be incorporated into a single web resource. In the event that a subgroup of pages represents a sufficient shift in theme, it should be classified as an independent resource. For example, the department of neuroscience of a university (resource 1) may have a lab led by a researcher (resource 2). Website/web tool produced by or useful to, a biomedical researcher

How Can We Find Resources?  “I would like funding to create an RNAi database because one does not exist.” – biomedical researcher  But… There must be a place where researchers can go to find resources before they create them again!

How Can We Find Resources? Database (2200) Software tool (900) Biobanks (550) Services (100)

Access to Biomedical Resources Must Be Uniform!

Each resource implements a different, though related model; systems are complex and difficult to learn, in many cases Access to Biomedical Resources Must Be Uniform!

Need a Common Platform for Access to Biological Data

Need a Common Platform for Access to Biological Data  Not just RDF!  Not just XML!  Nosql! –no  Data, to a biologist is something that can be understood.  “…according to Bonda (2000) the Amygdaloid nucleus is connected to Field CA1 in the young adult monkey, subjected to the following conditions...”

Are We There Yet?  Of 2200 databases that NIF has in the Registry, we have only deeply registered 200  Of the 800 software tools, <100 have deep metadata and user communities  Not yet, but some things can help  If you have a tool / data please register at   If you have a choice, use open formats  If you have a choice, use common vocabularies  If you can, in papers and databases, use identifiers

Diseases of nervous system NeurodegenerativeSeizure disorders Neoplastic disease of nervous system NIH Reporter NIF data federated sources