Identification of a Homolog for a Potential Sperm Chemoattractant in the Zebrafish, Danio rerio Aiden Soroko Department of Biological Sciences, York College.

Slides:



Advertisements
Similar presentations
Recombinant DNA Technology
Advertisements

DNA Technology & Gene Mapping Biotechnology has led to many advances in science and medicine including the creation of DNA clones via recombinant clones,
Dolly the sheep ( ) 1. Animal and human cloning 2. Gene cloning.
The cloning and expression of SNAP-25a and b in zebrafish Maia Lavarias*, Dr. Wendy Boehmler Department of Biology, York College of Pennsylvania, York,
Chapter 4: recombinant DNA
Identification of a Mammalian Homolog to Amphibian Allurin, a Sperm Chemoattractant Zachary Harrison, Deborah D. Ricker, Ph.D., and Jeffrey P. Thompson,
A Study of a Peptide Secretion Signal Addition to Human Interleukin 13 Receptor Alpha 2 and Green Fluorescent Protein Jacqueline Freebery and Jeffrey P.
Recombinant DNA Introduction to Recombinant DNA technology
Molecular Cloning Biology 20L Spring Overview of Molecular Cloning Restriction digest of plasmid pUC19 and phage –GOAL: Linear pUC19 DNA and several.
1 Characterization, Amplification, Expression Screening of libraries Amplification of DNA (PCR) Analysis of DNA (Sequencing) Chemical Synthesis of DNA.
MCB 130L Lecture 1: DNA.
Manipulating the Genome: DNA Cloning and Analysis 20.1 – 20.3 Lesson 4.8.
Construction, Transformation, and Prokaryote Expression of a Fused GFP and Mutant Human IL-13 Gene Sequence Lindsay Venditti, Department of Biological.
Biotechnology and Recombinant DNA
GENETIC ENGINEERING (RECOMBINANT DNA TECHNOLOGY)
DNA Technology- Cloning, Libraries, and PCR 17 November, 2003 Text Chapter 20.
Objective 2: TSWBAT describe the basic process of genetic engineering and the applications of it.
Investigation of Syntaxin 3B in Developing Zebrafish Embryos Derek Anderson* and Wendy Boehmler, PhD Department of Biological Sciences, York College of.
CULTURE INDEPENDENT ANALYSIS OF MICROBIAL COMMUNITIES IN SOIL
Chapter 20~DNA Technology & Genomics. Who am I? Recombinant DNA n Def: DNA in which genes from 2 different sources are linked n Genetic engineering:
AP Biology: Chapter 14 DNA Technologies
DNA Technology Chapter 12. Applications of Biotechnology Biotechnology: The use of organisms to perform practical tasks for human use. – DNA Technology:
Manufacture of Human Interleukin 13 Protein Using a Prokaryotic Expression System Ryan Rupp, York College of Pennsylvania, Department of Biological Sciences.
Recombinant DNA I Basics of molecular cloning Polymerase chain reaction cDNA clones and screening.
How do you identify and clone a gene of interest? Shotgun approach? Is there a better way?
Manipulating DNA.
Today: Biotechnology. Over 600 recent transposon insertions were identified by examining DNA from 36 genetically diverse humans. Tbl 1 Which transposable.
Construction of an Enriched Microsatellite Library for the Lizard Sceloporus undulates erythrocheilus Wendy Jin, Matthew Rand, Stefano Zweifel Department.
DNA Technologies.
Remember the limitations? –You must know the sequence of the primer sites to use PCR –How do you go about sequencing regions of a genome about which you.
NIS - BIOLOGY Lecture 57 – Lecture 58 DNA Technology Ozgur Unal 1.
Chapter 14 The Techniques of Molecular Genetics
Design and Production of a GFP and Human IL-13 Linked Chimeric Protein in E. coli Using pQE-30 Vector Stephen R. Suknaic Department of Biology, York College.
Conclusion We were successful in the design of the siRNA vector with AGT-1 insert and transformation of HT115 cells resulting in the silencing of AGT-1.
19.1 Techniques of Molecular Genetics Have Revolutionized Biology
-Know that we can manipulate genomes by inserting or deleting certain genes. -What about synthesizing an entirely novel genome using sequencing technology?
Determining if the fused product of Botox A and GFP can be used to observe the binding patterns of Botulinum toxin A. Felicia Yothers Department of Biological.
Biotechnology What does it mean? Tools and Technologies Selected Applications Biotechnology 1: any method based on knowledge of biological processes that.
Background Gregory Fischer Julie Anderson Daniel Herman  Department of Biology  University of Wisconsin-Eau Claire Heterologous expression of MBP1 from.
FIGURE 7.1. Synthesis of a double-stranded DNA molecule.
Researchers use genetic engineering to manipulate DNA. Section 2: DNA Technology K What I Know W What I Want to Find Out L What I Learned.
Chapter 20: DNA Technology and Genomics - Lots of different techniques - Many used in combination with each other - Uses information from every chapter.
Neutrophil-specific Overexpression of FCHO2, a PCH family protein, in Danio rerio Chelsey Warning and Kate Cooper, PhD Loras College Department of Biology.
Chapter 20 DNA Technology and Genomics. Biotechnology is the manipulation of organisms or their components to make useful products. Recombinant DNA is.
CH. 20 WARM-UP Share 3 things you are grateful for. Use your textbook (Ch. 20) to answer the following review questions. 1. What is recombinant DNA? 2.
FOOTHILL HIGH SCHOOL SCIENCE DEPARTMENT Chapter 13 Genetic Engineering Section 13-2 Manipulating DNA.
MOLECULAR BIOLOGY IN ACTION In this project, students will use what they have learned in the previous courses to complete a larger multi-step molecular.
Genetic Engineering Chapter 13 Test on Friday 03/13/09 Reviewing Content Due 03/12/ and #28.
Molecular Cloning. Definitions   Cloning :   Obtaining a piece of DNA from its original source (Genome) and introducing it in a DNA vector   Sub-cloning:
Cloning of a PCR Amplified Gene PPT 2. About Plasmids The plasmid pUC19 used for this experiment is derived from the pUC series. It has a single recognition.
Small interfering ribonucleic acids (siRNA’s) are double stranded RNA molecules used to post transcriptionally silence genes by binding to specific mRNA.
Basic Tools: Recombinant DNA Techniques Cut Purified DNA with Restriction Enzymes Transform E. coli Purified plasmid DNA Various restriction enzymes T4.
15.2 Recombinant DNA. Copying DNA – How do scientists copy the DNA of living organisms? –The first step in using the polymerase chain reaction method.
Jeopardy Final Jeopardy Gene Cloning Plasmids Ligase PCR $100 $100
Figure 20.0 DNA sequencers DNA Technology.
Chapter 7 Recombinant DNA Technology and Genomics
DNA Technologies (Introduction)
Dr. Peter John M.Phil, PhD Assistant Professor Atta-ur-Rahman School of Applied Biosciences (ASAB) National University of Sciences & Technology (NUST)
Cloning Overview DNA can be cloned into bacterial plasmids for research or commercial applications. The recombinant plasmids can be used as a source of.
Today: Biotechnology Exam #2 Th 10/23 in class.
DNA Tools & Biotechnology
Molecular Cloning.
DNA Technology Now it gets real…..
and PowerPoint “DNA Technology,” from
BIO201 Introduction to Biochemistry & Biotechnology
Chapter 14 Bioinformatics—the study of a genome
DNA Technology & Genomics
DNA Tools & Biotechnology
Recombinant DNA Unit 12 Lesson 2.
Tamar Ratner, Ron Piran, Natasha Jonoska, Ehud Keinan 
Presentation transcript:

Identification of a Homolog for a Potential Sperm Chemoattractant in the Zebrafish, Danio rerio Aiden Soroko Department of Biological Sciences, York College of Pennsylvania Introduction Sperm chemotaxis, the guidance of sperm to an ovulated egg via the development of a chemical gradient, has been widely demonstrated across several different species of invertebrates and is a very important process affecting reproduction (Sliwa 1999, Xiang et al. 2004). Chemoattractants are produced by and secreted from ovulated eggs and create a gradient that causes sperm to accumulate towards the egg. The gradient manipulates the direction the sperm travel in, and also serves to enhance motility or velocity of the sperm (Xiang et al. 2004). The zebrafish, Danio rerio, is an external fertilizer (Kondoh et al. 2008). Since it releases gametes into the environment, the communication that takes place between the gametes is crucial. The roles of chemoattractants in zebrafish fertilization are relatively unexplored. A known chemoattractant in the mouse, Mus musculus, shows high homology to a sequence in the zebrafish that has thus far been uncharacterized (Harrison 2010). Hypothesis I hypothesize that this homologous sequence in the zebrafish genome encodes for a protein that exhibits chemoattractant properties and plays a role in reproduction. Develop sequence for fusion protein including linking sequence. Generate oligonucleotides using Gene2Oligo Ligase chain reaction (LCR) used to create gene PCR to amplify DNA, Gel Electrophoresis, Extraction & Purification of PCR Product Ligation of PCR product into pDrive cloning vector High efficiency transformation of E. coli Plasmid purification Discussion Results Future Research Create full fusion protein and integrate into expression vector Transfect eukaryotic monkey kidney cos-7 cells with expression vector Protein extraction & purification using nickel-metal ion chromatography Zebrafish sperm chemoattractant bio assay to test effectiveness of protein Figure 3. The pDrive cloning vector used in the high efficiency transformation of E. coli. PCR product inserted into vector at multiple cloning site (location U). A successful insertion interrupts the P lac pathway. Figure 4. E. coli was plated on nutrient agar containing IPTG, X-gal, and kanamycin for selection. Transformed bacteria that incorporated the insertion are white in color while bacteria that did not incorporate the insertion are blue in color. A linker was successfully created to combine the possible chemoattractant and green fluorescent protein together to increase the proteins size and also allow for proper folding. Completion of the chemoattractant-GFP fusion protein is needed to test the initial hypothesis that the sequence in the zebrafish genome, homologous to that found in a mouse, will possess sperm-attractant properties. Ideally, if the chemoattractant/GFP fusion protein can be synthesized in a eukaryotic cell where glycosylation will take place and cause the protein to fold and become functional, we suspect it will exhibit chemoattractant properties when placed in close proximity to zebrafish sperm. Literature Cited Harrison, Z Identification of a mammalian homolog to amphibian allurin, a sperm chemoattractant. YCP Thesis. Kondoh, E., Komo, A, and Inaba, K., et al Valosin-containing protein/p97 interacts with sperm-attracting factor (SAAF) in the ascidian egg and modulates sperm-attracting activity. Development, Growth, and Differentiation 50: Weidmann, M., Wilson, W.J., Czajka, J., Luo, J., Barany, F., and Batt, C.A Ligaase chain reaction (LCR) – overview and applications. Genomic Research (3): S51-S54. Xiang, X, et al The sperm chemoattractant “allurin” is expressed and secreted from the Xenopus oviduct in a hormone-regulated manner. Developmental Biology 275: Accumulation of sperm towards an unfertilized egg. ( Figure 2. LCR is a DNA amplification technique that is based on the use of oligonucleotide primers. These primers hybridize to a strand of target DNA and are very accurate as they can discriminate from DNA strands differing by a single base pair. If the oligonucleotides are exactly complementary to the target strand, the ligase will covalently join them together. If not, there will be no product. This method helps to prevent false-positive ligation products. The ligated products can then be used for a template resulting in an exponential amplification process (Weidmann, Wilson, Czajka, et al.). ( Acknowledgement I would like to thank Dr. Thompson for his guidance on this project. The 114 base pair linking sequence was successfully inserted into the pDrive cloning vector (Figure 3) and used to transform E. coli. White colonies appeared on the selection plate indicating a successful insertion (Figure 4). Methods ChemoattractantGreen Fluorescent Protein 114 bp linker Figure 1. Schematic for fusion protein construction. The bracket indicates the region synthesized by LCR. A linking sequence was an important addition to space the components out to allow room for proper folding and for the protein to achieve functionality.