UKOLN is supported by: eBank UK : linking research data, scholarly communications and learning. Dr Liz Lyon, UKOLN, University of Bath, UK JISC CNI Conference.

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Presentation transcript:

UKOLN is supported by: eBank UK : linking research data, scholarly communications and learning. Dr Liz Lyon, UKOLN, University of Bath, UK JISC CNI Conference July 2004, Brighton. a centre of expertise in digital information management

JISC CNI Conference Overview Setting the scene: e-Research The scholarly knowledge cycle –Data, information and workflows –Provenance eBank UK Project –The experience so far –Issues arising Challenges for the future

Setting the scene: e-Research

JISC CNI Conference e-Research trends summary Increasingly data–intensive, quantitative Implementing new science Inter-disciplinary New disciplines e.g. Astro-informatics New skills requirements –IT + statistics + domain Collaborative Highly distributed resources –Knowledge discovery / extraction Open access to data and information –OECD Declaration January 2004 A changing landscape of scholarly communications

The scholarly knowledge cycle

JISC CNI Conference Research & e-Science workflows Aggregator services: national, commercial Repositories : institutional, e-prints, subject, data, learning objects Data curation: databases & databanks Validation Harvesting metadata Data creation / capture / gathering: laboratory experiments, Grids, fieldwork, surveys, media Deposit / self- archiving Peer-reviewed publications: journals, conference proceedings Publication Validation Data analysis, transformation, mining, modelling Searching, harvesting, embedding Presentation services: subject, media-specific, data, commercial portals Resource discovery, linking, embedding Linking The scholarly knowledge cycle. Liz Lyon, eBankUK article. Ariadne, July 2003.

JISC CNI Conference Research & e-Science workflows Aggregator services: national, commercial Repositories : institutional, e-prints, subject, data, learning objects Data curation: databases & databanks Validation Harvesting metadata Data creation / capture / gathering: laboratory experiments, Grids, fieldwork, surveys, media Deposit / self- archiving Peer-reviewed publications: journals, conference proceedings Publication Validation Data analysis, transformation, mining, modelling Searching, harvesting, embedding Presentation services: subject, media-specific, data, commercial portals Resource discovery, linking, embedding Linking

JISC CNI Conference 20048

JISC CNI Conference 20049

JISC CNI Conference

JISC CNI Conference

JISC CNI Conference

JISC CNI Conference

JISC CNI Conference Research & e-Science workflows Aggregator services: national, commercial Repositories : institutional, e-prints, subject, data, learning objects Data curation: databases & databanks Validation Harvesting metadata Data creation / capture / gathering: laboratory experiments, Grids, fieldwork, surveys, media Deposit / self- archiving Peer-reviewed publications: journals, conference proceedings Publication Validation Data analysis, transformation, mining, modelling Searching, harvesting, embedding Presentation services: subject, media-specific, data, commercial portals Resource discovery, linking, embedding Linking

JISC CNI Conference Learning & Teaching workflows Aggregator services: national, commercial Repositories : institutional, e-prints, subject, data, learning objects Institutional presentation services: portals, Learning Management Systems, u/g, p/g courses, modules Harvesting metadata Resource discovery, linking, embedding Peer-reviewed publications: journals, conference proceedings Validation Resource discovery, linking, embedding Deposit / self- archiving Learning object creation, re-use Searching, harvesting, embedding Quality assurance bodies Validation Presentation services: subject, media-specific, data, commercial portals

JISC CNI Conference Learning & Teaching workflows Research & e-Science workflows Aggregator services: national, commercial Repositories : institutional, e-prints, subject, data, learning objects Data curation: databases & databanks Institutional presentation services: portals, Learning Management Systems, u/g, p/g courses, modules Validation Harvesting metadata Data creation / capture / gathering: laboratory experiments, Grids, fieldwork, surveys, media Resource discovery, linking, embedding Deposit / self- archiving Peer-reviewed publications: journals, conference proceedings Publication Validation Data analysis, transformation, mining, modelling Resource discovery, linking, embedding Deposit / self- archiving Learning object creation, re-use Searching, harvesting, embedding Quality assurance bodies Validation Presentation services: subject, media-specific, data, commercial portals Resource discovery, linking, embedding Linking

JISC CNI Conference Learning & Teaching workflows Research & e-Science workflows Aggregator services: eBank UK Repositories : institutional, e-prints, subject, data, learning objects Data curation: databases & databanks Institutional presentation services: portals, Learning Management Systems, u/g, p/g courses, modules Validation Harvesting metadata Data creation / capture / gathering: laboratory experiments, Grids, fieldwork, surveys, media Resource discovery, linking, embedding Deposit / self- archiving Peer-reviewed publications: journals, conference proceedings Publication Validation Data analysis, transformation, mining, modelling Resource discovery, linking, embedding Deposit / self- archiving Learning object creation, re-use Searching, harvesting, embedding Quality assurance bodies Validation Presentation services: subject, media-specific, data, commercial portals Resource discovery, linking, embedding Linking

The eBank UK Project

JISC CNI Conference eBank UK project JISC-funded for 1 year from September 2003 UKOLN at the University of Bath (lead), University of Southampton, University of Manchester Building the links between research data, scholarly communication and learning e-Science testbed Combechem –Grid-enabled combinatorial chemistry –Crystallography, laser and surface chemistry –Development of an e-Lab using pervasive computing technology –National Crystallography Service Resource Discovery Network PSIgate physical sciences portal

JISC CNI Conference The project team UKOLN Michael Day Monica Duke Rachel Heery Liz Lyon + Andy Powell Southampton Les Carr Simon Coles Jeremy Frey Chris Gutteridge Mike Hursthouse Manchester John Blunden-Ellis

Comb-e-Chem Project X-Ray e-Lab Analysis Properties Properties e-Lab Simulation Video Diffractometer Grid Middleware Structures Database

JISC CNI Conference Crystallography workflow Initialisation: mount new sample on diffractometer & set up data collection Collection: collect data Processing: process and correct images Solution: solve structures Refinement: refine structure CIF: produce CIF (Crystallographic Information File format) Report: generate Crystal Structure Report

JISC CNI Conference

JISC CNI Conference First steps: establishing common ground… Understand the data creation process Terminology and definitions –Data –Metadata –Datafile –Dataset –Data holding Different views –Digital library researchers, computer scientists, chemists –Generic vs specific –Modeller vs practitioner Aim for a common ontology Modelling the domain Creating a metadata schema

JISC CNI Conference Progress update Version 2.0 eBank metadata schema Enhanced ePrints.org software Pilot institutional e-data repository for harvesting (raw, derived, results data) Exports records as ebank_dc and oai_dc Validation of schema Pilot eBank UK aggregator service Develop search interface Version 1.0 Testing with PSIgate physical sciences portal – embedding eBank UK

JISC CNI Conference Some metadata issues Using simple and qualified Dublin Core Additional chemical information in schema for harvesting e.g. empirical formula Schema contains International Chemical Identifier (InChI) Links to all datasets associated with an experiment Links to individual datasets within an experiment Links to eprints (and other published literature) derived from the data Using vocabularies specific to crystallography Will substitute when standards emerge

JISC CNI Conference ebank_dc record (XML) Crystal structure (data holding) Crystal structure report (HTML) Dataset Institutional repository Deposit Dataset dc:identifier dcterms:references Linking dc:type=CrystalStructure and/or Collection Model input Andy Powell, UKOLN. Eprint oai_dc record (XML) dcterms:isReferencedBy dc:type=Eprint and/or Text Data flow in eBank

JISC CNI Conference ebank_dc record (XML) Crystal structure (data holding) Crystal structure report (HTML) Dataset Institutional repository eBank UK aggregator service ePrint UK aggregator service Subject service Deposit Harvesting OAI-PMH ebank_dc Harvesting OAI-PMH oai_dc Dataset dc:identifier dcterms:references Linking dc:type=CrystalStructure and/or Collection Model input Andy Powell, UKOLN. Eprint oai_dc record (XML) dcterms:isReferencedBy dc:type=Eprint and/or Text Data flow in eBank

JISC CNI Conference ebank_dc record (XML) Crystal structure (data holding) Crystal structure report (HTML) Dataset Institutional repository eBank UK aggregator service ePrint UK aggregator service Subject service Deposit Harvesting OAI-PMH ebank_dc Harvesting OAI-PMH oai_dc Searching, linking and embedding Dataset dc:identifier dcterms:references Linking dc:type=CrystalStructure and/or Collection Model input Andy Powell, UKOLN. PSIgate portal Eprint oai_dc record (XML) dcterms:isReferencedBy dc:type=Eprint and/or Text Data flow in eBank

JISC CNI Conference Currently we are…… Planning Consultation Workshop – August Developing a demonstrator Promoting Open Access and Open eData Archives to international crystallographic organisations, publishers, learned societies e-Science All Hands Meeting, Nottingham September Phase 2 proposal funding sought for further 12 months

Challenges for the future

JISC CNI Conference Phase 2 plan…….(1) Continue to progress generic data models and metadata schemas Validation against other schema –CLRC Scientific Metadata Model vs (under revision) Complex digital objects Investigate packaging options –METS –MPEG 21 DIDL –?? Metadata enhancement - subject keyword additions to datasets based on knowledge of keywords in related publications

JISC CNI Conference Phase 2…..(2) Investigate identifiers e.g. International Chemical Identifier (InChI code) –Access to scientific (climate) data using DOIs (German National Library of Science & Technology) Explore context sensitive linking: find me –Datasets by this person –Journal articles by this person –Datasets related to this subject –Journal articles on this subject –Learning objects by this person –Learning objects on this subject

JISC CNI Conference Phase 2…….(3) Workflow embedding –Expand to include SMART e-Lab metadata e.g. sample preparation e-Learning embedding and pedagogic evaluation –MChem course –Chemical informatics course Expand into other physical sciences Feasibility study in a related domain - biosciences

JISC CNI Conference Learning & Teaching workflows Research & e-Science workflows Aggregator services: eBank UK Repositories : institutional, e-prints, subject, data, learning objects Data curation: databases & databanks Institutional presentation services: portals, Learning Management Systems, u/g, p/g courses, modules Validation Harvesting metadata Data creation / capture / gathering: laboratory experiments, Grids, fieldwork, surveys, media Resource discovery, linking, embedding Deposit / self- archiving Peer-reviewed publications: journals, conference proceedings Publication Validation Data analysis, transformation, mining, modelling Resource discovery, linking, embedding Deposit / self- archiving Learning object creation, re-use Searching, harvesting, embedding Quality assurance bodies Validation Presentation services: subject, media-specific, data, commercial portals Resource discovery, linking, embedding Linking

JISC CNI Conference Potential longer term impact 1.Track data, information and workflows in e-research and scholarly communications – knowledge audit?? 2.Validate the accuracy and authenticity of derived works – ideas audit?? 3.Facilitate explicit referencing and acknowledgment of original contributors – intellectual integrity?? 4.Raise standards associated with publication of research outputs – academic publishing rigour?? 5.Implement open access to and dissemination of data and information – enhance the research process?? 6.Give students links to original data underpinning published works – enhance the learning process??

JISC CNI Conference

Thank you. Questions?…..