Koji KANO and Hiroaki KITAGISHI (Doshisha University, Kyoto, Japan) Cyclodextrin Dimers as Simple Myoglobin Models in Aqueous Solution.

Slides:



Advertisements
Similar presentations
Protein Function Globins and Antibodies 3/10/2003.
Advertisements

Ligands and reversible binding. Ligands Kinetic experiments study the rate at which reactions happen.- how conc of reactant and product change as funct.
Oxygen Binding Proteins
Chemical Biology 03 BLOOD Biomolecular Structure Myoglobin and Hemoglobin 9/28-30/09
Meat Color ANSC Meat Color Meat color is very important because it affects consumer purchase decisions Research continues to find ways to improve.
Myoglobin and Hemoglobin
Lect. 8-1 Globular Proteins Some design principles Globular proteins fold so as to "bury" the hydrophobic side chains, minimizing their contact with water.
General Properties of Complex Binding Function - Structure Relationships Hemoglobin 1.
Structure and function
Overview energy is required for all cellular work most organisms produce ATP by using energy stored in the bonds of organic molecules such as carbohydrates.
Biochemistry 2/e - Garrett & Grisham Copyright © 1999 by Harcourt Brace & Company.
Myoglobin- Key Properties
Use hemoglobin/myoglobin as an example of a soluble protein molecule to review many important principles of protein structure and function to introduce.
Lecture 15: Regulation of Proteins 2: Allosteric Control of Hemoglobin Hemoglobin and Myoglobin Allosteric Transition in Hemoglobin Physiological Role.
Protein Function Structure will determine the function of the protein.
Bioinorganic Chemistry
The heme group..
Dr. Nasim.  Hemeproteins are a group of specialized proteins that contain heme as a tightly bound prosthetic group  hemoglobin and myoglobin, the two.
Oxygen Storage in Muscle Tissue Myoglobin (Mb) Originally isolated from sperm whales 10X abundance greater in aquatic- than terrestrial-mammals Mb knockout.
Oxygen Binding Proteins
Transport of O2 and CO2 by hemoglobin
Energy and Respiration Larry Scheffler Lincoln High School
Structures of Myoglobin and Hemoglobin
Energy and Respiration
Protein Structure/Function C483 Spring Proteins segments which fold first can promote the folding of other sections of the protein into the native.
Oxygen Transport (II) 1. Special features of myoglobin 1.Isolated haem can bind oxygen but in doing so risks having its Fe oxidised from Fe(II) to Fe(III),
Oxygen Transport Beth A. Bouchard BIOC 212: Biochemistry of Human Disease Spring 2006.
1 Iron(III) Complex of a Crown Ether- Porphyrin Conjugate and Reversible Binding of Superoxide to Its Iron(II) Form Katharina Dürr, Brendan P. Macpherson,
H 2 O(l) --> H 2 O(s) Normal freezing point of H 2 O = K The change in enthalpy is the enthalpy of freezing - enthalpy change associated when one.
Blood Oxygen physically diffused by 0.2ml / 100 ml blood By Hb 20ml / 100ml blood So it’s the main function.
Protein Function C483 Spring Function Transport (binding) Structure Motor Catalysis (binding) Immunity (binding) Regulation (binding) Signaling.
Respiratory System Physiology
Kate Fullerton & Deborah Bakshiyev B9 - Respiration.
Buffers of Biological & Clinical Significance Lecture 4 Lecturer: Amal Abu Mostafa Lecture 4 Lecturer: Amal Abu Mostafa 1 Clinical Analytical Chemistry.
22.5 The temperature dependence of reaction rates Arrhenius equation: A is the pre-exponential factor; E a is the activation energy. The two quantities,
Thermodynamics of binding of iron(III) by brasilibactin A James Harrington, Heekwang Park, Yongcheng Ying, Jiyong Hong, and Alvin L. Crumbliss, Department.
Bio 98 - Lecture 7 Oxygen Binding Proteins
Portrait of a Protein in Action
Topic B – Part 9 Respiration IB Chemistry Topic B – Biochem.
Christian R. Goldsmith Auburn University Department of Chemistry and Biochemistry.
Reactions of organometallic complexes Textbook H: Chapter 5.1 – 5.5 Textbook A: Chapter 5.
CHMI E.R. Gauthier, Ph.D. 1 CHMI 2227E Biochemistry I Proteins: - Quaternary structure.
Hemoglobin, an AllostericProtein. Hemoglobin vs Myoglobin Hemoglobin (Hb): - found in red blood cells - responsible for transport of O 2 from lungs to.
Hemoglobin: A Paradigm for Cooperativity and Allosteric Regulation
Relationship between the structure and function of proteins.
Hemoglobin, an Allosteric Protein Stryer Short Course.
Chapter 8 Metabolism: Energy and Enzymes Energy is the capacity to do work; cells must continually use energy to do biological work. Kinetic Energy is.
Biochemistry Lecture 8. Why Enzymes? Higher reaction rates Greater reaction specificity Milder reaction conditions Capacity for regulation Metabolites.
Suggested HW Ch. 5 1 – 9 (Chapter 5.1, 5.2)
3-D Structure / Function. Myoglobin/ Hemoglobin First protein structures determined Oxygen carriers Hemoglobin transport O 2 from lungs to tissues Myoglobin.
Chem. 1B – 10/15 Lecture. Announcements I Exam 2: Two Weeks from Today (10/29) Lab: Experiment 4 Report – due Mon./Tues. Today’s Lecture –Complex Ion.
STRUCTURE & FUNCTION OF MYOGLOBIN
Globular proteins Myoglobin and hemoglobin
Chapter 7 Protein Function Ligand --- a molecule bound reversibly by a protein Binding site --- the site on protein to which a ligand binds Induced fit.
Myoglobin (Mb) and Hemoglobin (Hb) have related, but different, roles in the body Hemoglobin: Found in red blood cells Promotes diffusion of O 2 throughout.
Transport of Oxygen The liquid part of the blood, the blood plasma, carries some O 2 in solution, but is limited (only 0.3mL of O 2 per 100mL plasma)
1 Organic Chemistry, Third Edition Janice Gorzynski Smith University of Hawai’i Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction.
1. Hemoglobin & Myoglobin 2 Glossary of terms A molecule bound reversibly by a protein is called a ligand A ligand binds at a site on the protein called.
Dr. Shumaila Asim Lecture # 1
Myoglobin and Hemoglobin
Chapter 2.4: Chemical Reactions and Enzymes
Globular proteins Myoglobin and hemoglobin
GLOBULAR HEMOPROTEINS
Mechanistic Basis for Allosteric O2 Binding to Hemoglobin
Prepared by: Vishal Patel Professor: Dr. E. Thornton CHEM 504
Structure and function of hemoglobin
bonds break atoms move around bonds reform
Volume 99, Issue 5, Pages (September 2010)
Hemoglobin and Myoglobin
The Functional Diversity of Proteins: The Example of Hemoglobin
Presentation transcript:

Koji KANO and Hiroaki KITAGISHI (Doshisha University, Kyoto, Japan) Cyclodextrin Dimers as Simple Myoglobin Models in Aqueous Solution

Carrier of Diatomic Molecules

 Myoglobin (Mb) is an oxygen-storage hemoprotein.  Oxygen bound to Mb is stabilized by two His residues.  Heme center is surrounded by a hydrophobic wall of the protein. His 64 (distal His) His 93 (proximal His)

A picket-fence Por prepared by Prof. Collman’s group Collman, J. P.; Boulatov, R.; Sunderland, C. J.; Fu. L. Chem. Rev. 2004, 104, Jameson, G. B.; Rodley, G. A.; Robinson, W. T.; Gagne, R. R.; Reed, C. A.; Collman, J. P. Inorg. Chem. 1978, 17,

 Many artificial dioxygen receptors have been prepared.  These model compounds can bind dioxygen only in absolute organic solvents such as toluene.  Dioxygen adducts are easily autoxidized in the presence of a trace amount of water.  Many artificial dioxygen receptors have been prepared.  These model compounds can bind dioxygen only in absolute organic solvents such as toluene.  Dioxygen adducts are easily autoxidized in the presence of a trace amount of water.

Jiang, D.-L.; Aida, T. Chem. Commun. 1996, Zingg, A.; Felber, B.; Gramlich, V.; Fu, L.; Collman, J. P.; Diederich, F. Helv. Chim. Acta 2002, 85, Dendrimers as Mb models

 Difficulty in preparation of five coordinate Fe(II)Por Why is modeling of the Mb or Hb functions so difficult?

 Easy oxidative dimerization of O 2 -Fe(II)Por yielding a  -oxo-dimer of Fe(III)Por Why is modeling of the Mb or Hb functions so difficult?

 Direct oxidation of Fe(II)Por to Fe(III)Por with O 2 Why is modeling of the Mb or Hb functions so difficult?

 Water-promoted autoxidation of O 2 -Fe(II)Por Why is modeling of the Mb or Hb functions so difficult?

The main reason why modeling in aqueous solution is so difficult.

Chem. Lett. 1996, J. Am. Chem. Soc. 2002, 124, Chem. Lett. 1996, J. Am. Chem. Soc. 2002, 124, pK a 4.8 pK a 0.4

Inorg. Chem. 2006, 45, J. Am. Chem. Soc. 2008, 130,

Synthetic route of Py2CD and Py3CD Py2CD Py3CD

Experimental procedures for examining O 2 and CO binding of Fe(II)PCD in an aqueous solution at pH 7.0.

UV-vis spectra of Fe(II)PCD, O 2 -Fe(II)PCD and CO-Fe(II)PCD in phosphate buffer at pH 7.0 and 3 o C.

O 2 affinity at 25 o C and pH 7.0 P 1/2 : hemoCD 17 Torr Fe(II)PCD 176 Torr P 1/2 : Mb (sperm whale) 0.29 Torr Hb (human R) 0.17 Hb (human T) 26 Model systems in organic solvents 0.1 ~ 2150 O 2 affinity at 25 o C and pH 7.0 P 1/2 : hemoCD 17 Torr Fe(II)PCD 176 Torr P 1/2 : Mb (sperm whale) 0.29 Torr Hb (human R) 0.17 Hb (human T) 26 Model systems in organic solvents 0.1 ~ 2150

CO affinity at 25 o C and pH 7.0 P 1/2 : hemoCD 1.5 x Torr Fe(II)PCD Torr P 1/2 : Mb (sperm whale) 0.02 Torr Hb (human R) CO affinity at 25 o C and pH 7.0 P 1/2 : hemoCD 1.5 x Torr Fe(II)PCD Torr P 1/2 : Mb (sperm whale) 0.02 Torr Hb (human R) 0.013

A conformation of Fe(II)PCD is similar to that of Mb or Hb. A conformation of hemoCD is similar to that of leghemoglobin.

Cage Effects The Fe center of FeTPPS is completely capped with the two CD cavities. O 2 as well as CO released from the Fe(II) center cannot slip out of the cleft of CD capsule because of its hydrophobic nature. Released O 2 or CO rebinds to the Fe(II) center. Fe(II)PCD

Picket-fence porphyrin

Oxy-hemoCD

Reductive nitrosylation of Fe(III)PCD and oxidation of (NO)Fe(II)PCD

Nitric Oxide NO is biosynthesized from arginine and dioxygen by nitric oxide synthases (NOS). NO causes relaxation of smooth muscle to control blood pressure. NO stimulates the soluble guanylate cyclase leading to subsequent formation of cyclic GMP. Macrophages generate NO to kill antigen. etc.

Nitrosylation of Fe(II)PCD max 420 nm

max 401 nm Reductive nitrosylation of Fe(III)P(TMe-  -CD) 2 complex

No reductive nitrosylation occurs in the absence of cyclodextrin.

max = 401 nm max = 420 nm No reductive nitrosylation

This mechanism has been well established. Oxy-Mb regulates NO in biological system. The mechanism has not been clarified. NO inhibits the activities of proteins such as cyt P450, cyt c oxidase, nitrile hydrase, and catalase.

 (NO)Fe(II)PCD is gradually oxidized to Fe(III)PCD and NO 3 - in an aerobic aqueous solution at pH 7.0,  (NO)Fe(II)P(TMe-  -CD) 2 is not oxidized at all.

In the case without cyclodextrin  In the absence of CD, reductive nitrosylation cannot be applied.  (NO)Fe(II)TPPS can be prepared from nitrosylation of Fe(II)TPPS in a glove box.  (NO)Fe(II)TPPS is very unstable in an aerobic aqueous solution. Ring- opening reaction of FeTPPS may occur.

t 1/2 = 6.3 h t 1/2 = ∞ No oxidation occurs. Decomposition of the porphyrin ring occurs.

k max : the maximum reaction rate constant for autoxidation of (NO)Fe(II)PCD k max = 5.1 x s -1 k off : the reaction rate constant for the dissociation of NO from (NO)Fe(II)PCD k off = 5.6 x s -1

Mechanism for oxidation of (NO)Fe(II)PCD with dioxygen Rate-determining step

Eyring plot for autoxidation of (NO)Fe(II)PCD.  H ‡ = 98.9 kJ mol -1  S ‡ = 0.17 J mol -1 K -1  A large activation enthalpy change reflects the endothermic dissociation of the NO-Fe(II) bond.  Since activation entropy change is almost zero, no bimolecular reaction participates in the rate- determining step. The thermodynamic parameters support the reaction mechanism proposed herein.

Oxidation of (NO)Mn(II)PCD by O 2

Autoxidation of (NO)Mn(II)PCD (NO)Mn(II) Mn(III) Zero-order kinetics was observed for the aut- oxidation of (NO)Mn(II)PCD. t 1/2 ~ 35 h

If the equilibrium A ⇌ B exclusively shifts to A and a very small amount of B existing in the system relatively rapidly reacts to yield a final product, such a reaction obeys zero-order kinetics. very slow

The rate of autoxidation of Mn(II)PCD is much faster than that of (NO)Mn(II)PCD.

Autoxidation of (NO)Mn(II)P(TMe-  -CD) 2 (NO)Mn(II) Mn(III) Mn(II)

Mechanism for Oxidation of (NO)Mn(II)PCD with Dioxygen

Mechanism for oxidation of (NO)Fe(II)PCD with dioxygen

 HemoCD and Fe(II)PCD are good carriers of simple diatomic molecules such as O 2, CO, and NO in aqueous solution.  HemoCD shows the extremely high CO affinity that might be used for medicinal purposes.  Fe(II)PCD is a good model for studying interactions of NO with hemoproteins.  The mechanism for oxidation of (NO)Fe(II)Por by O 2 was clarified in the present study.  HemoCD and Fe(II)PCD are good carriers of simple diatomic molecules such as O 2, CO, and NO in aqueous solution.  HemoCD shows the extremely high CO affinity that might be used for medicinal purposes.  Fe(II)PCD is a good model for studying interactions of NO with hemoproteins.  The mechanism for oxidation of (NO)Fe(II)Por by O 2 was clarified in the present study. Summary