Theoretical Study of Photodissociation dynamics of Hydroxylbenzoic Acid Yi-Lun Sun and Wei-Ping Hu* Department of Chemistry and Biochemistry, National.

Slides:



Advertisements
Similar presentations
68th OSU International Symposium on Molecular Spectroscopy TH08
Advertisements

Potential Energy Surface. The Potential Energy Surface Captures the idea that each structure— that is, geometry—has associated with it a unique energy.
Microscopic time-dependent analysis of neutrons transfers at low-energy nuclear reactions with spherical and deformed nuclei V.V. Samarin.
Ultraviolet Photodissociation Dynamics of the Cyclohexyl Radical Michael Lucas, Yanlin Liu, Jingsong Zhang Department of Chemistry University of California,
ChE 553 Lecture 25 Theory Of Activation Barriers 1.
METO 621 LESSON 7. Vibrating Rotator If there were no interaction between the rotation and vibration, then the total energy of a quantum state would be.
ABSTRACT INTRODUCTION CONCLUSIONS PATTERN FORMATION OF FUNCTIONALIZED FULLERENES ON GOLD SURFACES: ATOMISTIC AND MODEL CALCULATIONS Greg Bubnis, Sean Cleary.
Potential Energy Surfaces
Simulating the spectrum of the water dimer in the far infrared and visible Ross E. A. Kelly, Matt J. Barber, Jonathan Tennyson Department of Physics and.
CHEMISTRY 2000 Topic #1: Bonding – What Holds Atoms Together? Spring 2008 Dr. Susan Lait.
Simulation of X-ray Absorption Near Edge Spectroscopy (XANES) of Molecules Luke Campbell Shaul Mukamel Daniel Healion Rajan Pandey.
METO 621 Lesson 20.
METO 637 LESSON 3. Photochemical Change A quantum of radiative energy is called a photon, and is given the symbol h Hence in a chemical equation we.
Photochemistry Lecture 2 Fates of excited states of polyatomic molecules.
Infrared spectroscopy of Li(methylamine) n (NH 3 ) m clusters Nitika Bhalla, Luigi Varriale, Nicola Tonge and Andrew Ellis Department of Chemistry University.
CHEMISTRY 2000 Topic #1: Bonding – What Holds Atoms Together? Spring 2010 Dr. Susan Lait.
Conclusions The spin density surfaces of the antiferromagnetic ground states demonstrate opposite spins at the ends, and alternating spins along the length.
Which method? We’re using Density Functional Theory (DFT) as it gives us the most accurate results for transition metals in the least amount of time.
Ab Initio Calculations of the Ground Electronic States of the C 3 Ar and C 3 Ne Complexes Yi-Ren Chen, Yi-Jen Wang, and Yen-Chu Hsu Institute of Atomic.
VADIM L. STAKHURSKY *, LILY ZU †, JINJUN LIU, TERRY A. MILLER Laser Spectroscopy Facility, Department of Chemistry, The Ohio State University 120 W. 18th.
RESULTS I: Comparison for the different rare-gases Xenon SO constant = eV E( 2 P 1/2 ) – E( 2 P 3/2 ) = eV D 0 (Xe 3 + ) = eV 1 Experiment:
Effect of Aromatic Interactions on Flavin's Redox Potential: A Theoretical Study Michael A. North and Sudeep Bhattacharyya Department of Chemistry, University.
國立中正大學 化學暨生物化學研究所 博士論文口試 孫翊倫 (Yi-Lun Sun) 指導教授:胡維平 (Wei-Ping Hu) 中華民國 101 年 7 月 10 日.
Ultraviolet Photodissociation Dynamics of the 3-Cyclohexenyl Radical Michael Lucas, Yanlin Liu, Jasmine Minor, Raquel Bryant, Jingsong Zhang Department.
Electrostatic Effects in Organic Chemistry A guest lecture given in CHM 425 by Jack B. Levy March, 2003 University of North Carolina at Wilmington (subsequently.
Introduction Methods Conclusions Acknowledgement The geometries, energies, and harmonic vibrational frequencies of complexes studied were calculated using.
The Advanced Light Source (ALS) at Lawerence Berkeley National Laboratory Berkeley, California Tunable VUV radiation from 8 – 30 eV Brian W. Ticknor 1,
Pulsed-jet discharge matrix isolation and computational study of Bromine atom complexes: Br---BrXCH 2 (X=H,Cl,Br) OSU 66 th International Symposium on.
Vibrational, Electronic, and Fluorescence Spectra and Ab Initio Calculations of 1,4-Benzodioxan (14BZD) Juan Yang, Martin Wagner, Daniel Autrey, and Jaan.
Veracity through variety (of methods): Simulating dipeptides with little volume Tanja van Mourik.
Formation of interstellar HCCCCC via reaction of ground state carbon atom and diacetylene, HCCCCH B. J. Sun 1, C. Y. Huang 1, H. H. Kuo 1, K. T. Chen 1,
Theoretical Investigation of the M + –RG 2 (M = Alkaline Earth Metal; RG = Rare Gas) Complexes Adrian M. Gardner, Richard J. Plowright, Jack Graneek, Timothy.
M. KUMRU, M. KOCADEMİR, H. M. ALFANDA Fatih University, Faculty of Arts and Sciences, Physics Department, Büyükçekmece, Istanbul.
Infrared Spectroscopy & Structures of Mass-Selected Rhodium Carbonyl & Rhodium Dinitrogen Cations Heather L. Abbott, 1 Antonio D. Brathwaite 2 and Michael.
Infrared Photodissociation Spectroscopy of TM + (N 2 ) n (TM=V,Nb) Clusters E. D. Pillai, T. D. Jaeger, M. A. Duncan Department of Chemistry, University.
LITERATURE SEARCH ASSIGNMENT A) Properties of diatomic molecules A diatomic molecule is a molecule composed of two atoms. For homonuclear diatomics the.
A Combined Theoretical and Experimental Study of the HF+CN  F + HCN Reaction; The CN-HF Entrance channel complex Jeremy Merritt and Michael Heaven Department.
AB INITIO POTENTIAL ENERGY SRFACE FOR THE Xe - OH INTERACTION 64 th OSU International Symposium on Molecular Spectroscopy June22-26’2009 COLUMBUS Vipin.
METO 637 Lesson 4. Electronically Excited Species Electronically excited species can be formed as the result of optical pumping, photo- fragmentation,
V.B. Singh Department of Physics Udai Pratap Autonomous College
IR spectra of Methanol Clusters (CH3OH)n Studied by IR Depletion and VUV Ionization Technique with TOF Mass Spectrometer Department of Applied Chemistry.
Computational Studies of the Electronic Spectra of Transition-Metal-Containing Molecules James T. Muckerman, Zhong Wang, Trevor J. Sears Chemistry Department,
1 HOONO ISOMERIZATION TO HONO 2 INVOLVING CONICAL INTERSECTIONS T. J. DHILIP KUMAR, and JOHN R. BARKER Department of Atmospheric, Oceanic and Space Sciences,
Sandra C. Balanga, Maria Benavides, PhD Department of Natural Sciences Abstract : This study focuses on determining.
Benzyl Alcohol 2012/07/17. Geometries at the B3LYP/aug-cc-pVTZ level dHOCCdOCC5CrOH relative energy (kcal/mol) including ZPE 1gauche cis
DISPERSED FLUORESCENCE (DF) SPECTROSCOPY OF JET-COOLED METHYLCYCLOHEXOXY (MCHO) RADICALS Jahangir Alam, Md Asmaul Reza, Amy Mason, Neil Reilly and Jinjun.
2008 International Symposium on Molecular Spectroscopy Anion Photoelectron Spectra of CHX 2 - and CX 2 - Properties of the Corresponding Neutrals Scott.
Simulation of Proton Transfer in Biological Systems Hong Zhang, Sean Smith Centre for Computational Molecular Science, University of Queensland, Brisbane.
IR photodepletion and REMPI spectroscopy of Li(NH 2 Me) n clusters Tom Salter, Victor Mikhailov, Corey Evans and Andrew Ellis Department of Chemistry International.
Vibronic Perturbations in the Electronic Spectrum of Magnesium Carbide Phalgun Lolur*, Richard Dawes*, Michael Heaven + *Department of Chemistry, Missouri.
Laser spectroscopy of a halocarbocation: CH 2 I + Chong Tao, Calvin Mukarakate, and Scott A. Reid Department of Chemistry, Marquette University 61 st International.
EXPERIMENTAL AND THEORETICAL STUDIES ON GLUCOSE HYDROGENATION TO PRODUCE SORBITOL M.Banu ( ) Marcia C. Martins Castoldi, React.Kinet.Catal.Lett.
Using a tight-binding approximation to compute the electronic structure of sensitizer molecules adsorbed onto TiO 2 surfaces. Daniel R. Jones & Alessandro.
Quantum Mechanical Description of Molecules Glenn V. Lo Department of Physical Sciences Nicholls State University.
Highlights in Physics –14 October 2005, Dipartimento di Fisica, Università di Milano Quantum methods in protein science C. Camilloni *, P. Cerri.
Lecture 4 Intramolecular energy transfer
M. Rezaei, J. George, L. Welbanks, and N. Moazzen-Ahmadi
Yi-Ren Chen and Yen-Chu Hsu Institute of Atomic and Molecular Sciences
Photo-oxidation of 2-(1H-inden-1-ylidene)-1-methyl-1,2-dihydropyridine (IMDP) S. Cogan and Y. Haas The Farkas Center for Light Induced Processes, Physical.
Dr. S. B Maulage Dept of Chemistry.
Ching-Hsing Yu, Samuel Cukierman, Régis Pomès  Biophysical Journal 
Chapter 1B Carbon Compounds and Chemical Bonds
Bohr, Emissions, and Spectra
Marcus Theory Elizabeth Greenhalgh, Amanda Bischoff, and Matthew Sigman University of Utah.
Organic Photochemistry
Bohr’s Model Nucleus Electron Orbit Energy Levels.
The Role of Higher CO-Multipole Moments in Understanding the Dynamics of Photodissociated Carbonmonoxide in Myoglobin  Nuria Plattner, Markus Meuwly 
Bohr’s Model Nucleus Electron Orbit Energy Levels.
Molecular Dynamics Simulation of Bacteriorhodopsin's Photoisomerization Using Ab Initio Forces for the Excited Chromophore  Shigehiko Hayashi, Emad Tajkhorshid,
Materials Oriented Modelling - Catalysis and Interactions in Solid and Condensed Phases Stockholm, Sweden on 28 June - 1 July, 2009.
Presentation transcript:

Theoretical Study of Photodissociation dynamics of Hydroxylbenzoic Acid Yi-Lun Sun and Wei-Ping Hu* Department of Chemistry and Biochemistry, National Chung Cheng University, Chia-Yi 621, Taiwan Abstract Aromatic amino acids have large UV absorption cross-sections and low fluorescence quantum yields. Ultrafast internal conversion, which transforms electronic excitation energy to vibrational energy,was assumed to account for the photostability of amino acids. Recent theoretical and experimental investigations suggested that low fluorescence quantum yields of phenol (chromophore of tyrosine) are due to the dissociation from a repulsive excited state. Radicals generated from dissociation may undergo undesired reactions. It contradicts the observed photostability of amino acids. In this work, we explored the photodissociation dynamics of 2-, 3- and 4- hydroxybenzoic acid using Ab initio calculations. TD B3LYP/6-311+G** and CAS/6-31+G** methods were used to predict excited state energy and potential energy surface. Our research shows that the excited state and the ground state potential energy surfaces change significantly for the conformers with intramolecular hydrogen bonding. It shows the importance of intramolecular hydrogen bond in the excited state dynamics and provides an alternative molecular mechanism for the photostability of aromatic amino acids upon irradiation of ultraviolet photons. Methods Results Conclusions Ground state geometries for various conformers and the corresponding interconversion transition states were calculated with the B3LYP/6–311+G** method. All ground-state electronic structure calculations were performed using the Gaussian 03 package. The excited-state energy calculation was done using the complete active space (CAS) theory with the 6-31+G** basis set. The active space consists of 12π electrons and 12 orbitals (6π, 4π*, and 2σ*). A state averaged approach with equal weighting was applied to calculate the two lowest states of A' and A" symmetry simultaneously. This calculation wascarried out using the MOLPRO 2009 program. For some nonplanar structures of 2HBA, the time- dependent (TD) B3LYP theory with G** basis set was applied to calculate the ground- and excited-state energies for a more consistent comparison to the energies of the planar structures and due to the consideration of computational resources. TD-B3LYP calculation was performed using the Gaussian 03 package. Different orientation of hydroxyl and carboxyl groups in hydroxybenzoic acids results in many conformers. 2-HBA has eight conformers. The calculated structures, relative energies, and barrier heights between these conformers are shown in Fig. 1 using B3LYP/6-311+G** method. The hydroxyl and carboxyl groups in 3-HBA and 4-HBA are too distant from one another for intramolecular hydrogen bonding to be a factor. As a result, even the most stable conformers of 3-HBA and 4-HBA are 4 ∼ 6 kcal/mol higher in energy than that the conformer 2-HBA-1. 3-HBA also has eight conformers and 4-HBA has only four conformers due to the symmetry. We calculated the PES for the ground state and the singlet excited states along the O–H bond distance of hydroxyl group for various conformers of HBA, as shown in Fig. 2. Calculations also include PES for phenol and 2- methylphenol for comparison. Fig. 1. Stable 2-HBA isomers. For phenol, the figure shows that the lowest singlet excited state 2A' is bound and its second excited state 1A" is repulsive. The 1A" state crosses 2A' at short O–H bond distance ( ∼ 1.1 Å) and then crosses the ground state at large O–H bond distance ( ∼ 1.8 Å). Concerning 3-HBA, 4-HBA, 2-methylphenol,and the 2-HBA conformers without intramolecular hydrogen bonding (e.g., 2-HBA-3 and 2-HBA-4), calculations showed that the lowest singlet excited state 2A' is bound and the second excited state 1A" is repulsive. The 1A" state crosses 2A' at short O–H bond distance and then crosses the ground state at large O–H bond distance. This result is similar to that of phenol. Hydrogen atom elimination initiates via the population transfer from the bright state 2A' to the dark state 1A", and then to the 1A' ground state. The sum of these two population transfer processes results in the H-atom elimination on a repulsive potential energy surface, producing ground-state products with large translational energies. Energy at the crossing point between 1A" and 2A' is about 135 kcal/mol relative to the ground-state energy minimum. It is about 120 kcal/mol above the ground-state energy minimum at the crossing point between 1A" state and the ground state. To explore the potential energy surfaces on geometries other than vicinity of the minimum energy structures on the ground-state, we calculated the potential energy curves as a function of both the O–H bond distance and C–O–H angle in the hydroxyl group. Two integrated 3-D plots viewed from different angles are shown in Fig. 3. The figure shows that the region of potential well on the 1A"state becomes smaller as the C–O–H angle increases. The 1A" becomes a repulsive state as the angle reaches 150 ◦. This suggests that some of the 2- HBA-1 can dissociate into fragment through H-atom elimination channel if the C–O– H angle increases significantly on the excited state during the dissociation process. Fig. 2. PES. The energies (kcal/mol) of the ground state and singlet excited states along the O-H bond distance (Å) in hydroxyl group. The solid squares, solid circles, open triangles and open circles represent 1A', 2A', 1A", and 2A", respectively. J. Chem. Phys. 134, (2011) Theoretical calculations of Hydroxylbenzoic Acid show that the excited state and the ground state potential energy surfaces change significantly for the conformers with intramolecular hydrogen bonding. It shows the importance of intramolecular hydrogen bond in the excited state dynamics and provides an alternative molecular mechanism for the photostability of aromatic amino acids upon irradiation of ultraviolet photons. Fig. 3. The potential energy surfaces of 2-HBA-1 along O–H bond distance and C–O–H angle in hydroxyl group. Acknowledgment : The work was performed with Prof. Chi-Kung Ni and other co-authors, at Institute of Atomic and Molecular Sciences, Academia Sinica. And supported by the National Science Council Taiwan, under contract NSC M MY3 and NSC M We thank the National Center for High-Performance Computing (NCHC) for providing part of computing resources.