Neuroimage Analysis Center An NCRR National Resource Center Viewing essentials GE Research § Isomics ¥ Surgical Planning Laboratory,

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Presentation transcript:

Neuroimage Analysis Center An NCRR National Resource Center Viewing essentials GE Research § Isomics ¥ Surgical Planning Laboratory, Brigham and Womens Hospital James Miller, Ph.D.. James Ross, M.Sc., Xi Wang, Ph.D., Steve Pieper, Ph.D. §, Wendy Plesniak, Ph.D. ¥

Neuroimage Analysis Center An NCRR National Resource Center Requisites, expectations and adaptations Clinicians and researchers need and expect imaging platforms to provide stock capabilities Window/level Pan/zoom Annotation Probe Measurement Oblique reformat Volume rendering Lightbox How do we adapt these concepts to a Slicer experience?

Neuroimage Analysis Center An NCRR National Resource Center Lightbox spx ?

Neuroimage Analysis Center An NCRR National Resource Center Standard lightbox viewing spx

Neuroimage Analysis Center An NCRR National Resource Center … with overlays

Neuroimage Analysis Center An NCRR National Resource Center … with annotations

Neuroimage Analysis Center An NCRR National Resource Center … with fiducials

Neuroimage Analysis Center An NCRR National Resource Center … with multiple reformations

Neuroimage Analysis Center An NCRR National Resource Center … with an editor X

Neuroimage Analysis Center An NCRR National Resource Center Oblique reformat Anatomy is rarely predominantly aligned axially, sagitally, or coronally Oblique reformation allows image display planes to be aligned to an anatomys principal axes Axial Oblique

Neuroimage Analysis Center An NCRR National Resource Center Standard oblique reformat CTRL-Right Button to manipulate reformation

Neuroimage Analysis Center An NCRR National Resource Center … with lightbox

Neuroimage Analysis Center An NCRR National Resource Center Comparing series and studies Longitudinal analysis Cross-sectional analysis

Neuroimage Analysis Center An NCRR National Resource Center Standard comparison of studies

Neuroimage Analysis Center An NCRR National Resource Center … with overlays

Neuroimage Analysis Center An NCRR National Resource Center … with annotations

Neuroimage Analysis Center An NCRR National Resource Center … with fiducials

Neuroimage Analysis Center An NCRR National Resource Center … after registration

Neuroimage Analysis Center An NCRR National Resource Center … with lightbox

Neuroimage Analysis Center An NCRR National Resource Center … with oblique reformation

Neuroimage Analysis Center An NCRR National Resource Center Applications Atlas construction Manual delineation Quality control Cross-sectional comparison of atlas subjects before and after aligning to common coordinate frame Cross-sectional comparison of atlas subjects to constructed atlas Atlas application Comparison of atlas to new subject Cross-sectional comparison of new subjects aligned with atlas Longitudinal analysis Response to therapy

Neuroimage Analysis Center An NCRR National Resource Center Image viewing is still predominantly 2D Native format of acquisition Precision dimensional measurements Multiplanar reformat (axial, sagittal, coronal) provides a natural (perhaps comfortable) navigation paradigm Lightbox provides a mechanism to display 3D relationships Oblique reformats provide a mechanism to mitigate 3D effects (improve accuracy of dimensional measurements) Longitudinal and cross-sectional comparisons build on the same framework of linked controls and coordinate frames Slicer3 allows all these capabilities to be layered due incorporation of coordinate frames at a fundamental level of the viewing pipeline