DCM Advanced, Part II Will Penny (Klaas Stephan) Wellcome Trust Centre for Neuroimaging Institute of Neurology University College London SPM Course 2014.

Slides:



Advertisements
Similar presentations
Dynamic Causal Modelling (DCM) for fMRI
Advertisements

Bayesian inference Lee Harrison York Neuroimaging Centre 01 / 05 / 2009.
Bayesian models for fMRI data
DCM: Advanced Topics Klaas Enno Stephan Translational Neuromodeling Unit (TNU) Institute for Biomedical Engineering, University of Zurich & ETH Zurich.
Computational and physiological models Part 2 Daniel Renz Computational Psychiatry Seminar: Computational Neuropharmacology 14 March, 2014.
Models of Effective Connectivity & Dynamic Causal Modelling
Experimental design of fMRI studies Methods & models for fMRI data analysis in neuroeconomics November 2010 Klaas Enno Stephan Laboratory for Social and.
DCM: Advanced topics Klaas Enno Stephan Laboratory for Social & Neural Systems Research Institute for Empirical Research in Economics University of Zurich.
DCM: Advanced topics Klaas Enno Stephan SPM Course Zurich
Methods & Models for fMRI data analysis 17 December 2008
Hanneke den Ouden Wellcome Trust Centre for Neuroimaging, University College London, UK Donders Institute for Brain, Cognition and Behaviour, Nijmegen,
DCM for fMRI: Theory & Practice
DCM: Advanced topics Klaas Enno Stephan Laboratory for Social & Neural Systems Research Institute for Empirical Research in Economics University of Zurich.
DCM: Advanced topics Klaas Enno Stephan Laboratory for Social & Neural Systems Research Institute for Empirical Research in Economics University of Zurich.
J. Daunizeau Wellcome Trust Centre for Neuroimaging, London, UK Institute of Empirical Research in Economics, Zurich, Switzerland Bayesian inference.
DCM: Advanced topics Rosalyn Moran Wellcome Trust Centre for Neuroimaging Institute of Neurology University College London With thanks to the FIL Methods.
DCM: Dynamic Causal Modelling for fMRI
Rosalyn Moran Wellcome Trust Centre for Neuroimaging Institute of Neurology University College London With thanks to the FIL Methods Group for slides and.
J. Daunizeau Motivation, Brain and Behaviour group, ICM, Paris, France Wellcome Trust Centre for Neuroimaging, London, UK Dynamic Causal Modelling for.
GUIDE to The… D U M M I E S’ DCM Velia Cardin. Functional Specialization is a question of Where? Where in the brain is a certain cognitive/perceptual.
Dynamic Causal Modelling THEORY SPM Course FIL, London October 2009 Hanneke den Ouden Donders Centre for Cognitive Neuroimaging Radboud University.
Dynamic Causal Modelling
DCM: Advanced topics Klaas Enno Stephan Zurich SPM Course 2014
Dynamic Causal Modelling (DCM) for fMRI
Dynamic Causal Modelling (DCM): Theory Demis Hassabis & Hanneke den Ouden Thanks to Klaas Enno Stephan Functional Imaging Lab Wellcome Dept. of Imaging.
DCM for fMRI: Advanced topics Klaas Enno Stephan Laboratory for Social & Neural Systems Research (SNS) University of Zurich Wellcome Trust Centre for Neuroimaging.
Dynamic Causal Modelling (DCM) for fMRI
18 th February 2009 Stephanie Burnett Christian Lambert Methods for Dummies 2009 Dynamic Causal Modelling Part I: Theory.
DCM for ERPs/EFPs Clare Palmer & Elina Jacobs Expert: Dimitris Pinotsis.
Dynamic Causal Modelling for fMRI Friday 22 nd Oct SPM fMRI course Wellcome Trust Centre for Neuroimaging London André Marreiros.
Dynamic Causal Modelling for fMRI Justin Grace Marie-Hélène Boudrias Methods for Dummies 2010.
Dynamic Causal Modelling Will Penny Wellcome Department of Imaging Neuroscience, University College London, UK FMRIB, Oxford, May
Dynamic causal modelling of electromagnetic responses Karl Friston - Wellcome Trust Centre for Neuroimaging, Institute of Neurology, UCL In recent years,
J. Daunizeau ICM, Paris, France ETH, Zurich, Switzerland Dynamic Causal Modelling of fMRI timeseries.
Dynamic Causal Modelling Advanced Topics SPM Course (fMRI), May 2015 Peter Zeidman Wellcome Trust Centre for Neuroimaging University College London.
Dynamic Causal Modelling for EEG and MEG
Abstract This tutorial is about the inversion of dynamic input-state-output systems. Identification of the systems parameters proceeds in a Bayesian framework.
Experimental design of fMRI studies Methods & models for fMRI data analysis November 2012 Sandra Iglesias Translational Neuromodeling Unit (TNU) Institute.
Dynamic Causal Modelling (DCM) Marta I. Garrido Thanks to: Karl J. Friston, Klaas E. Stephan, Andre C. Marreiros, Stefan J. Kiebel,
Dynamic Causal Modelling Introduction SPM Course (fMRI), October 2015 Peter Zeidman Wellcome Trust Centre for Neuroimaging University College London.
The world before DCM. Linear regression models of connectivity Structural equation modelling (SEM) y1y1 y3y3 y2y2 b 12 b 32 b 13 z1z1 z2z2 z3z3 0 b 12.
Ch. 5 Bayesian Treatment of Neuroimaging Data Will Penny and Karl Friston Ch. 5 Bayesian Treatment of Neuroimaging Data Will Penny and Karl Friston 18.
Bayesian Model Comparison Will Penny London-Marseille Joint Meeting, Institut de Neurosciences Cognitive de la Mediterranee, Marseille, September 28-29,
Dynamic Causal Modelling for fMRI
Dynamic Causal Model for evoked responses in MEG/EEG Rosalyn Moran.
DCM: Advanced Topics Klaas Enno Stephan Translational Neuromodeling Unit (TNU) Institute for Biomedical Engineering University of Zurich & Swiss Federal.
DCM: Advanced issues Klaas Enno Stephan Centre for the Study of Social & Neural Systems Institute for Empirical Research in Economics University of Zurich.
Bayesian inference Lee Harrison York Neuroimaging Centre 23 / 10 / 2009.
Dynamic Causal Models Will Penny Olivier David, Karl Friston, Lee Harrison, Andrea Mechelli, Klaas Stephan Mathematics in Brain Imaging, IPAM, UCLA, USA,
Bayesian Inference in fMRI Will Penny Bayesian Approaches in Neuroscience Karolinska Institutet, Stockholm February 2016.
Bayesian selection of dynamic causal models for fMRI Will Penny Olivier David, Karl Friston, Lee Harrison, Andrea Mechelli, Klaas Stephan The brain as.
Dynamic Causal Models Will Penny Olivier David, Karl Friston, Lee Harrison, Stefan Kiebel, Andrea Mechelli, Klaas Stephan MultiModal Brain Imaging, Copenhagen,
DCM: Advanced Topics Klaas Enno Stephan SPM Course FIL London
5th March 2008 Andreina Mendez Stephanie Burnett
Dynamic Causal Modeling of Endogenous Fluctuations
University of Zurich, February 2011
Effective Connectivity
Dynamic Causal Modelling (DCM): Theory
Wellcome Trust Centre for Neuroimaging University College London
Dynamic Causal Model for evoked responses in M/EEG Rosalyn Moran.
Dynamic Causal Modelling
Dynamic Causal Modelling
SPM2: Modelling and Inference
Dynamic Causal Modelling for M/EEG
Dynamic Causal Modelling
Bayesian Methods in Brain Imaging
CRIS Workshop: Computational Neuroscience and Bayesian Modelling
Effective Connectivity
Dynamic Causal Modelling for evoked responses
Will Penny Wellcome Trust Centre for Neuroimaging,
Presentation transcript:

DCM Advanced, Part II Will Penny (Klaas Stephan) Wellcome Trust Centre for Neuroimaging Institute of Neurology University College London SPM Course FIL

Overview Extended DCM for fMRI: nonlinear, two-state, stochastic Embedding computational models in DCMs Clinical Applications

endogenous connectivity direct inputs modulation of connectivity Neural state equation hemodynamic model λ x y integration BOLD yy y activity x 1 (t) activity x 2 (t) activity x 3 (t) neuronal states t driving input u 1 (t) modulatory input u 2 (t) t    The classical DCM: a deterministic, one-state, bilinear model

Factorial structure of model specification in DCM Three dimensions of model specification: –bilinear vs. nonlinear –single-state vs. two-state (per region) –deterministic vs. stochastic Specification via GUI.

bilinear DCM Bilinear state equation: driving input modulation driving input modulation non-linear DCM Two-dimensional Taylor series (around x 0 =0, u 0 =0): Nonlinear state equation:

Neural population activity fMRI signal change (%) x1x1 x2x2 x3x3 Nonlinear dynamic causal model (DCM) Stephan et al. 2008, NeuroImage u1u1 u2u2

V1 V5 stim PPC attention motion MAP = 1.25 Stephan et al. 2008, NeuroImage

V1 V5 PPC observed fitted motion & attention motion & no attention static dots

input Single-state DCM Intrinsic (within-region) coupling Extrinsic (between-region) coupling Two-state DCM Marreiros et al. 2008, NeuroImage

Estimates of hidden causes and states (Generalised filtering) Stochastic DCM Li et al. 2011, NeuroImage random state fluctuations w (x) account for endogenous fluctuations, fluctuations w (v) induce uncertainty about how inputs influence neuronal activity can be fitted to resting state data

Estimates of hidden causes and states (Generalised filtering) Stochastic DCM Good working knowledge of dDCM sDCMs (esp. for nonlinear models) can have richer dynamics than dDCM Model selection may be easier than with dDCM See Daunizeau et al. ‘sDCM: Should we care about neuronal noise ?’, Neuroimage, 2012

Overview Extended DCM for fMRI: nonlinear, two-state, stochastic Embedding computational models in DCMs Clinical Applications

Learning of dynamic audio-visual associations CS Response Time (ms) ± 650 or Target StimulusConditioning Stimulus or TS p(face) trial CS 1 2 den Ouden et al. 2010, J. Neurosci.

Hierarchical Bayesian learning model observed events probabilistic association volatility k v t-1 vtvt rtrt r t+1 utut u t+1 Behrens et al. 2007, Nat. Neurosci. prior on volatility

Explaining RTs by different learning models Trial p(F) True Bayes Vol HMM fixed HMM learn RW Bayesian model selection: hierarchical Bayesian model performs best 5 alternative learning models: categorical probabilities hierarchical Bayesian learner Rescorla-Wagner Hidden Markov models (2 variants) RT (ms) p(outcome) Reaction times den Ouden et al. 2010, J. Neurosci.

PutamenPremotor cortex Stimulus-independent prediction error p < 0.05 (SVC ) p < 0.05 (cluster-level whole- brain corrected) p(F) p(H) BOLD resp. (a.u.) p(F)p(H) BOLD resp. (a.u.) den Ouden et al. 2010, J. Neurosci.

Prediction error (PE) activity in the putamen PE during reinforcement learning PE during incidental sensory learning O'Doherty et al. 2004, Science den Ouden et al. 2009, Cerebral Cortex Could the putamen be regulating trial-by-trial changes of task-relevant connections? PE = “teaching signal” for synaptic plasticity during learning p < 0.05 (SVC ) PE during active sensory learning

Prediction errors control plasticity during adaptive cognition Modulation of visuo- motor connections by striatal prediction error activity Influence of visual areas on premotor cortex: –stronger for surprising stimuli –weaker for expected stimuli den Ouden et al. 2010, J. Neurosci. PPAFFA PMd Hierarchical Bayesian learning model PUT p = p = 0.017

Overview Extended DCM for fMRI: nonlinear, two-state, stochastic Embedding computational models in DCMs Clinical Applications

model structure Model-based predictions for single patients set of parameter estimates BMS model-based decoding

BMS: Parkison‘s disease and treatment Rowe et al. 2010, NeuroImage Age-matched controls PD patients on medication PD patients off medication DA-dependent functional disconnection of the SMA Selection of action modulates connections between PFC and SMA

Model-based decoding by generative embedding Brodersen et al. 2011, PLoS Comput. Biol. step 2 — kernel construction step 1 — model inversion measurements from an individual subject subject-specific inverted generative model subject representation in the generative score space A → B A → C B → B B → C A C B step 3 — support vector classification separating hyperplane fitted to discriminate between groups A C B jointly discriminative model parameters step 4 — interpretation

Model-based decoding of disease status: mildly aphasic patients (N=11) vs. controls (N=26) Connectional fingerprints from a 6-region DCM of auditory areas during speech perception Brodersen et al. 2011, PLoS Comput. Biol.

Model-based decoding of disease status: aphasic patients (N=11) vs. controls (N=26) Classification accuracy Brodersen et al. 2011, PLoS Comput. Biol. MGB PT HG (A1) MGB PT HG (A1) auditory stimuli

Multivariate searchlight classification analysis Generative embedding using DCM

Summary Model Selection Extended DCM for fMRI: nonlinear, two-state, stochastic Embedding computational models in DCMs Clinical Applications