Hyunggyu Park 박 형 규 Starting … Active …. Hyunggyu Park 박 형 규 Starting … Active …

Slides:



Advertisements
Similar presentations
Generalized Jarzynski Equality under Nonequilibrium Feedback
Advertisements

and Fluctuation Theorems
The Kinetic Theory of Gases
Heat flow in chains driven by noise Hans Fogedby Aarhus University and Niels Bohr Institute (collaboration with Alberto Imparato, Aarhus)
Thermodynamics versus Statistical Mechanics
1.The Statistical Basis of Thermodynamics 1.The Macroscopic & the Microscopic States 2.Contact between Statistics & Thermodynamics: Physical Significance.
Fluctuation Theorem & Jarzynski Equality Zhanchun Tu ( 涂展春 ) Department of Physics Tamkang University — new developments in nonequilibrium.
Lee Dong-yun¹, Chulan Kwon², Hyuk Kyu Pak¹ Department of physics, Pusan National University, Korea¹ Department of physics, Myongji University, Korea² Nonequilibrium.
The Fluctuation and NonEquilibrium Free Energy Theorems - Theory & Experiment The Fluctuation and NonEquilibrium Free Energy Theorems - Theory & Experiment.
Energy. Simple System Statistical mechanics applies to large sets of particles. Assume a system with a countable set of states.  Probability p n  Energy.
Quantum Refrigeration & Absolute Zero Temperature Yair Rezek Tova Feldmann Ronnie Kosloff.
Statistical Mechanics
Exploring Protein Motors -- from what we can measure to what we like to know Hongyun Wang Department of Applied Mathematics and Statistics University of.
The Fluctuation and NonEquilibrium Free Energy Theorems - Theory & Experiment The Fluctuation & Dissipation Theorems Lecture 2 Denis J. Evans, Edie Sevick,
NonEquilibrium Free Energy Relations and experiments - Lecture 3 Equilibrium Helmholtz free energy differences can be computed nonequilibrium thermodynamic.
Maximum Entropy, Maximum Entropy Production and their Application to Physics and Biology Prof. Roderick C. Dewar Research School of Biological Sciences.
Quantum thermodynamics: Thermodynamics at the nanoscale
Weakly nonlocal fluid mechanics Peter Ván Budapest University of Technology and Economics, Department of Chemical Physics –One component fluid mechanics.
PTT 201/4 THERMODYNAMIC SEM 1 (2012/2013). Objectives Apply the second law of thermodynamics to processes. Define a new property called entropy to quantify.
Thermodynamic principles JAMES WATT Lectures on Medical Biophysics Dept. Biophysics, Medical faculty, Masaryk University in Brno.
Absorbing Phase Transitions
Advanced methods of molecular dynamics Monte Carlo methods
Boltzmann Distribution and Helmholtz Free Energy
Heat conduction induced by non-Gaussian athermal fluctuations Kiyoshi Kanazawa (YITP) Takahiro Sagawa (Tokyo Univ.) Hisao Hayakawa (YITP) 2013/07/03 Physics.
Unique additive information measures – Boltzmann-Gibbs-Shannon, Fisher and beyond Peter Ván BME, Department of Chemical Physics Thermodynamic Research.
Introduction to (Statistical) Thermodynamics
Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies D. Collin, F. Ritort, C. Jarzynski, S. B. Smith, I. Tinoco, Jr.
Microscopic derivation of non- Gaussian Langevin equations for athermal systems ADVANCED STATISTICAL DYNAMICS GROUP KIYOSHI KANAZAWA Jan 28, 2015 Lunch.
Summary: Isolated Systems, Temperature, Free Energy Zhiyan Wei ES 241: Advanced Elasticity 5/20/2009.
TIME ASYMMETRY IN NONEQUILIBRIUM STATISTICAL MECHANICS Pierre GASPARD Brussels, Belgium J. R. Dorfman, College ParkS. Ciliberto, Lyon T. Gilbert, BrusselsN.
NON-EQUILIBRIUM IDENTITIES AND NONLINEAR RESPONSE THEORY FOR GRANULAR FLUIDS Hisao Hayakawa (Yukawa Institute for Theoretical Physics, Kyoto University,
Deca-Alanine Stretching
1 CE 530 Molecular Simulation Lecture 6 David A. Kofke Department of Chemical Engineering SUNY Buffalo
Equilibrium Information from Nonequilibrium Measurements in an Experimental Test of Jarzynski’s Equality Simon-Shlomo Poil 9.december 2005 Single Molecule.
Yoon kichul Department of Mechanical Engineering Seoul National University Multi-scale Heat Conduction.
Introduction to Statistical Thermodynamics of Soft and Biological Matter Dima Lukatsky FOM Institute for Atomic and Molecular Physics [AMOLF], Amsterdam.
Experimental results on the fluctuations in two out of equilibrium systems S. Joubaud, P.Jop, A. Petrossyan and S.C. Laboratoire de Physique, ENS de Lyon,
Stochastic Thermodynamics in Mesoscopic Chemical Oscillation Systems
 We just discussed statistical mechanical principles which allow us to calculate the properties of a complex macroscopic system from its microscopic characteristics.
THEORY The argumentation was wrong. Halting theorem!
The Problem of Constructing Phenomenological Equations for Subsystem Interacting with non-Gaussian Thermal Bath Alexander Dubkov Nizhniy Novgorod State.
Dynamical Fluctuations & Entropy Production Principles Karel Netočný Institute of Physics AS CR Seminar, 6 March 2007.
Efficiency of thermal radiation energy-conversion nanodevices Miguel Rubi I. Latella A. Perez L. Lapas.
Introduction to Statistical Thermodynamics of Soft and Biological Matter Lecture 2 Statistical thermodynamics II Free energy of small systems. Boltzmann.
Black Holes and the Fluctuation Theorem Susumu Okazawa ( 総研大, KEK) with Satoshi Iso and Sen Zhang, arXiv: work in progress.
Beyond Onsager-Machlup Theory of Fluctuations
Assignment for the course: “Introduction to Statistical Thermodynamics of Soft and Biological Matter” Dima Lukatsky In the first.
Masakiyo Kitazawa ( Osaka U. ) Diffusion of Non-Gaussianity in Heavy Ion Collisions MK, Asakawa, Ono, arXiv: SQM, Birmingham, 23, July 2013.
Black Holes and the Fluctuation Theorem Susumu Okazawa ( 総研大, KEK) with Satoshi Iso and Sen Zhang, arXiv: work in progress.
Statistical Mechanics and Multi-Scale Simulation Methods ChBE
Hisao Hayakawa (YITP, Kyoto University) Physics and chemistry in quantum dissipative systems, YITP, Kyoto University(2010/08/09) Fluctuation theorem and.
Thermodynamics, fluctuations, and response for systems out of equilibrium Shin-ichi Sasa (University of Tokyo) 2007/11/05 in collaboration with T.S. Komatsu,
Chapter 6: Basic Methods & Results of Statistical Mechanics
Physics II Thermology; Electromagnetism; Quantum physics.
Made by, Vasava vipul [ ]. Thermodynamics Thermodynamics is the science of energy conversion involving heat and other forms of energy, most.
THE SECOND LAW OF THERMODYNAMICS Entropy. Entropy and the direction of time Microscopically the eqs. of physics are time reversible ie you can turn the.
A fresh look at hydrodynamics from fluctuation formulas Shin-ichi Sasa and Masato Itami 1.
General Physics 1 Hongqun Zhang The Department of Physics, Beijing Normal University June 2005.
Fluctuation relations in Ising models G.G. & Antonio Piscitelli (Bari) Federico Corberi (Salerno) Alessandro Pelizzola (Torino) TexPoint fonts used in.
Stochastic thermodynamics and Fluctuation theorems
I NITIAL M EMORY IN H EAT P RODUCTION Chulan Kwon, Myongji University Jaesung Lee, Kias Kwangmoo Kim, Kias Hyunggyu Park, Kias The Fifth KIAS Conference.
Ch18 The Micro/Macro Connection
Introduction Overview of Statistical & Thermal Physics
Entropy and Thermodynamic 2nd laws : New Perspective
Boltzmann statistics Reservoir R U0 -  Combined system U0 = const
Chapter 3 The 2nd law of thermodynamics
Energy dissipation and FDR violation
Introduction to Statistical
Revisiting Entropy Production Principles
Introduction to Statistical & Thermal Physics (+ Some Definitions)
Presentation transcript:

Hyunggyu Park 박 형 규 Starting … Active …

Hyunggyu Park 박 형 규 Starting … Active …

whose dynamics are manifested over a broad spectrum of length and time scales, are driven systems. Because active systems are maintained in non-equilibrium steady states without relaxing to equilibrium, conventional approaches based on equilibrium statistical thermodynamics are inadequate to describe the dynamics. Active systems Hyunggyu Park 박 형 규 Nonequilibrium Thermodynamics far from EQ  Fluctuation Theorems  Breakdown of Fluctuation Dissipation Theorems Active matter Assemblage of self-propelled particles, which convert energy locally into directed/persistent/non-random motion.

Introduction to Fluctuation theorems 1. Nonequilibrium processes 2. Brief History of Fluctuation theorems 3. Jarzynski equality & Crooks FT 4. Experiments 5. Stochastic thermodynamics 6. Entropy production and FTs 7. Ending 2014 summer school on active systems, GIST, Gwangju (June 23, 25, 2014) [Bustamante] Hyunggyu Park

Nonequilibrium processes Why NEQ processes? - biological cell (molecular motors, protein reactions, …) - electron, heat transfer,.. in nano systems - evolution of bio. species, ecology, socio/economic sys.,... - moving toward equilibrium & NEQ steady states (NESS) - interface coarsening, ageing, percolation, driven sys., … Thermodynamic 2 nd law - law of entropy increase or irreversibility NEQ Fluctuation theorems - go beyond thermodynamic 2 nd law & many 2 nd laws. - some quantitative predictions on NEQ quantities (work/heat/EP) - experimental tests for small systems - trivial to derive and wide applicability for general NEQ processes

Brief history of FT (I) 

Brief history of FT (II)

Thermodynamics & Jarzynski/Crooks FT Thermodyn. 2 nd law Thermodyn. 1 st law System Phenomenological law ▶ Work and Free energy Total entropy does not change during reversible processes. Total entropy increases during irreversible (NEQ) processes. Jarzynski equality (IFT) Crooks relation (DFT)

Jarzynski equality & Fluctuation theorems Simplest derivation in Hamiltonian dynamics - Intial distribution must be of Boltzmann (EQ) type. - Hamiltonian parameter changes in time. (special NE type). - In case of thermal contact (stochastic) ? crucial generalized still valid state space

Jarzynski equality & Fluctuation theorems Crooks ``detailed”fluctuation theorem time-reversal symmetry for deterministic dynamics Crooks detailed FT for PDF of Work ``Integral”FT odd variable

Experiments DNA hairpin mechanically unfolded by optical tweezers Collin/Ritort/Jarzynski/Smith/Tinoco/Bustamante, Nature, 437, 8 (2005) Detailed fluctuation theorem

PNAS 106, (2009)

arXiv:

Summary of Part I Jarzynski equality Crooks relation : time-reverse path

Stochastic thermodynamics Microscopic deterministic dynamics Macroscopic thermodynamics Stochastic dynamics

Langevin (stochastic) dynamics state space trajectory System

Stochastic process, Irreversibility & Total entropy production state space trajectory time-rev

Total entropy production and its components System

Fluctuation theorems Integral fluctuation theorems System

Fluctuation theorems Integral fluctuation theorems Detailed fluctuation theorems Thermodynamic 2 nd laws

Probability theory Consider two normalized PDF’s : state space trajectory Define “relative entropy” Integral fluctuation theorem (exact for any finite-time trajectory)

Probability theory Consider the mapping : Require Detailed fluctuation theorem reverse path (exact for any finite t)

Dynamic processes & Path probability ratio : time-reverse path

Langevin dynamics : time-reverse path

Fluctuation theorems reverse path Irreversibility (total entropy production)

Fluctuation theorems reverse path Work free-energy relation (dissipated work)

Fluctuation theorems reverse path House-keeping & Excess entropy production NEQ steady state (NESS) for fixed

Dynamic processes with odd-parity variables?

If odd-parity variables are introduced ???

Ending  Remarkable equality in non-equilibrium (NEQ) dynamic processes, including Entropy production, NEQ work and EQ free energy.  Turns out quite robust, ranging over non-conservative deterministic system, stochastic Langevin system, Brownian motion, discrete Markov processes, and so on.  Still source of NEQ are so diverse such as global driving force, non- adiabatic volume change, multiple heat reservoirs, multiplicative noises, nonlinear drag force (odd variables), and so on.  Validity and applicability of these equalities and their possible modification (generalized FT) for general NEQ processes.  More fluctuation theorems for classical and also quantum systems  Nonequilibrium fluctuation-dissipation relation (FDR) : Alternative measure (instead of EP) for NEQ processes?  Usefulness of FT? Effective measurements of free energy diff., driving force (torque),..  Need to calculate P(W), P(Q), … for a given NEQ process.