NA-MIC National Alliance for Medical Image Computing CMR Toolkit Threshold Model Module Salma Bengali, Alan Morris, Josh Cates, Rob.

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NA-MIC National Alliance for Medical Image Computing CMR Toolkit Threshold Model Module Salma Bengali, Alan Morris, Josh Cates, Rob MacLeod CARMA Center/SCI Institute University of Utah © 2012, All Rights Reserved

National Alliance for Medical Image Computing Learning Objective Threshold Model Module in Slicer © 2012, All Rights Reserved

National Alliance for Medical Image Computing Current Workflow Wall and Endo Models MRI Projected on Wall Model Thresholded Model

National Alliance for Medical Image Computing Slicer: Release Data: CARMA Slicer Extension Tutorial Data Required Materials © 2012, All Rights Reserved

National Alliance for Medical Image Computing Additional Sample Data 60 patients

National Alliance for Medical Image Computing Pre-requisite Tutorial © 2012, All Rights Reserved

National Alliance for Medical Image Computing Platforms © 2012, All Rights Reserved DevelopedTested

National Alliance for Medical Image Computing Overview © 2012, All Rights Reserved Load the dataThreshold the model

National Alliance for Medical Image Computing Loading the Data Select ‘Choose Directory to Add’ in the pop-up menu

National Alliance for Medical Image Computing Loading the Data Select the directory containing your dataset

National Alliance for Medical Image Computing Loading the Data

National Alliance for Medical Image Computing Threshold Model Input volumes { Output model

National Alliance for Medical Image Computing Threshold Model Create the wall and endo models

National Alliance for Medical Image Computing Threshold Model Viewer automatically updates to show the output models

National Alliance for Medical Image Computing Threshold Model Select the wall model for the next step

National Alliance for Medical Image Computing Threshold Model 1.Select the probe input image button 2.The MRI image intensity will be mapped to the wall model

National Alliance for Medical Image Computing Threshold Model Adjust the thresholds as required

National Alliance for Medical Image Computing Conclusion This module can be used for thresholding a model of the left atrium wall.