The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL FADTTS: Functional Analysis of Diffusion Tensor Tract Statistics Hongtu Zhu, Ph.D. Department of Biostatistics.

Slides:



Advertisements
Similar presentations
1 Detecting Subtle Changes in Structure Chris Rorden –Diffusion Tensor Imaging Measuring white matter integrity Tractography and analysis.
Advertisements

SPM 2002 C1C2C3 X =  C1 C2 Xb L C1 L C2  C1 C2 Xb L C1  L C2 Y Xb e Space of X C1 C2 Xb Space X C1 C2 C1  C3 P C1C2  Xb Xb Space of X C1 C2 C1 
Camino and DTI-TK: Advanced Diffusion MRI Pipeline for Traumatic Brain Injury Gary Hui Zhang, PhD Microstructure Imaging Group Centre for Medical Image.
Diffusion Tensor MRI And Fiber Tacking Presented By: Eng. Inas Yassine.
NAMIC: UNC – PNL collaboration- 1 - October 7, 2005 Fiber tract-oriented quantitative analysis of Diffusion Tensor MRI data Postdoctoral fellow, Dept of.
Classical inference and design efficiency Zurich SPM Course 2014
Diffusion Tensor Imaging Tim Hughes & Emilie Muelly 1.
DTI-Based White Matter Fiber Analysis and Visualization Jun Zhang, Ph.D. Laboratory for Computational Medical Imaging & Data Analysis Laboratory for High.
Age and treatment related local hippocampal changes in schizophrenia explained by a novel shape analysis method 1,2 G Gerig, 3 K Muller, 3 E Kistner, 3.
Sponsor: Prof. Sidney Spector Computational anatomy to assess growth pattern of early brain development in healthy and disease populations Guido Gerig.
Diffusion Tensor Imaging (DTI) is becoming a routine technique to study white matter properties and alterations of fiber integrity due to pathology. The.
Caudate Shape Discrimination in Schizophrenia Using Template-free Non-parametric Tests Y. Sampath K. Vetsa 1, Martin Styner 1, Stephen M. Pizer 1, Jeffrey.
False Discovery Rate Methods for Functional Neuroimaging Thomas Nichols Department of Biostatistics University of Michigan.
Fiber Tracking Techniques in Magnetic Resonance Diffusion Tensor Imaging Grace Michaels CSUN, Computer Science Junior.
Laurent Itti: CS599 – Computational Architectures in Biological Vision, USC Lecture 7: Coding and Representation 1 Computational Architectures in.
NAMIC: UNC – PNL collaboration- 1 - October 7, 2005 Quantitative Analysis of Diffusion Tensor Measurements along White Matter Tracts Postdoctoral fellow,
Li Wang1, Feng Shi1, Gang Li1, Weili Lin1, John H
The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Adaptive Weighted Deconvolution Model to Estimate the Cerebral Blood Flow Function in Dynamic Susceptibility.
NA-MIC National Alliance for Medical Image Computing DTI atlas building for population analysis: Application to PNL SZ study Casey Goodlett,
Automatic Brain Segmentation in Rhesus Monkeys February 2006, SPIE Medical Imaging 2006 Funding provided by UNC Neurodevelopmental Disorders Research Center.
Sparse Shape Representation using the Laplace-Beltrami Eigenfunctions and Its Application to Modeling Subcortical Structures Xuejiao Chen.
FINSIG'05 25/8/2005 1Eini Niskanen, Dept. of Applied Physics, University of Kuopio Principal Component Regression Approach for Functional Connectivity.
Enhanced Correspondence and Statistics for Structural Shape Analysis: Current Research Martin Styner Department of Computer Science and Psychiatry.
SPM short course – Oct Linear Models and Contrasts Jean-Baptiste Poline Neurospin, I2BM, CEA Saclay, France.
Current work at UCL & KCL. Project aim: find the network of regions associated with pleasant and unpleasant stimuli and use this information to classify.
NA-MIC National Alliance for Medical Image Computing DTI Atlas Registration via 3D Slicer and DTI-Reg Martin Styner, UNC Clement Vachet,
Contrasts & Inference - EEG & MEG Himn Sabir 1. Topics 1 st level analysis 2 nd level analysis Space-Time SPMs Time-frequency analysis Conclusion 2.
NA-MIC National Alliance for Medical Image Computing Validation of DTI Analysis Guido Gerig, Clement Vachet, Isabelle Corouge, Casey.
NA-MIC National Alliance for Medical Image Computing NAMIC UNC Site Update Site PI: Martin Styner Site NAMIC folks: Clement Vachet, Gwendoline.
NCBC EAB, January 2010 NA-MIC Highlights: A Core 1 Perspective Ross Whitaker University of Utah National Alliance for Biomedical Image Computing.
References: [1]S.M. Smith et al. (2004) Advances in functional and structural MR image analysis and implementation in FSL. Neuroimage 23: [2]S.M.
Functional Brain Signal Processing: EEG & fMRI Lesson 15 Kaushik Majumdar Indian Statistical Institute Bangalore Center M.Tech.
Generalized Tensor-Based Morphometry (TBM) for the analysis of brain MRI and DTI Natasha Leporé, Laboratory of Neuro Imaging at UCLA.
NA-MIC National Alliance for Medical Image Computing A longitudinal study of brain development in autism Heather Cody Hazlett, PhD Neurodevelopmental.
NA-MIC National Alliance for Medical Image Computing National Alliance for Medical Image Computing: NAMIC Ron Kikinis, M.D.
Fiber Demixing with the Tensor Distribution Function avoids errors in Fractional Anisotropy maps Liang Zhan 1,Alex D. Leow 2,3, Neda Jahanshad 1, Arthur.
Contrasts & Statistical Inference
Dave Frank & Maggie Mahan
NA-MIC - Contrasting Tractography Method Conference Utah/UNC results Sylvain Gouttard Guido Gerig Casey Goodlett Santa Fe, October 1 st & 2 nd 2007.
NA-MIC National Alliance for Medical Image Computing UNC Core 1: What did we do for NA-MIC and/or what did NA-MIC do for us Guido Gerig,
NA-MIC National Alliance for Medical Image Computing NA-MIC UNC Guido Gerig, Martin Styner, Isabelle Corouge
Conclusions Simulated fMRI phantoms with real motion and realistic susceptibility artifacts have been generated and tested using SPM2. Image distortion.
PSY4320 Research methods in cognitive neuroscience Preliminary results Lars T. Westlye, PhD Research Fellow Center for the Study of Human Cognition Department.
NA-MIC National Alliance for Medical Image Computing NAMIC UNC Site Update Site PI: Martin Styner UNC Site NAMIC folks: C Vachet, G Roger,
Functional Mixed Effect Models Spatial-temporal Process Longitudinal Data Objectives: Dynamic functional effects of covariates of interest on functional.
Sonia Pujol, PhD -1- National Alliance for Medical Image Computing Neuroimage Analysis Center Diffusion Tensor Imaging tutorial Sonia Pujol, Ph.D. Surgical.
SGPP: Spatial Gaussian Predictive Process Models for Neuroimaging Data Yimei Li Department of Biostatistics St. Jude Children’s Research Hospital Joint.
Corpus Callosum Probabilistic Subdivision based on Inter-Hemispheric Connectivity May 2005, UNC Radiology Symposium Original brain images for the corpus.
Jingwen Zhang1, Hongtu Zhu1,2, Joseph Ibrahim1
The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL FFGWAS Fast Functional Genome Wide Association AnalysiS of Surface-based Imaging Genetic Data Chao Huang.
The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL FVGWAS: Fast Voxelwise Genome Wide Association Analysis of Large-scale Imaging Genetic Data Tutorial: pipeline,
Age and treatment related local hippocampal changes in schizophrenia explained by a novel shape analysis method 1,2 G Gerig, 2 M Styner, 3 E Kistner, 3.
Corpus Callosum Probabilistic Subdivision based on Inter-Hemispheric Connectivity Martin Styner1,2, Ipek Oguz1, Rachel Gimpel Smith2, Carissa Cascio2,
Diffusion Image Analysis
The General Linear Model
D Nain1, M Styner3, M Niethammer4, J J Levitt4,
Human Brain Mapping Conference 2003 # 653
Multiple Change Point Detection for Symmetric Positive Definite Matrices Dehan Kong University of Toronto JSM 2018 July 30, 2018.
Contrasts & Statistical Inference
The General Linear Model
The General Linear Model
Hierarchical Models and
Contrasts & Statistical Inference
The General Linear Model
The General Linear Model
The General Linear Model
Contrasts & Statistical Inference
Diffusion Tensor MRI of White Matter of Healthy Full-term Newborns: Relationship to Neurodevelopmental Outcomes Higher white matter integrity (as reflected.
Dr. J Bruce Morton & Daamoon Ghahari
Presentation transcript:

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL FADTTS: Functional Analysis of Diffusion Tensor Tract Statistics Hongtu Zhu, Ph.D. Department of Biostatistics and Biomedical Research Imaging Center, University of North Carolina at Chapel Hill

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Outline Motivation Multivariate Varying Coefficient Models Simulation Studies Real Data Analysis

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Motivation Functional Connectivity Structural Connectivity Anatomical MRI, DTI (HARDI) group 1 group 2 EEG, fMRI, resting fMRI

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Neonatal Brain Development Knickmeyer RC, et al. J Neurosci, : Motivation PI: John H. Gilmore.

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Early Brain Development Knickmeyer RC, et al. J Neurosci, : Motivation 2 week 1 year 2 year

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Diffusion Tensor Tract Statistics Motivation 2 week 1 year2 year 2 week 1 year2 year FATensor

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Motivation Casey, B.J. et al. TRENDS in Cognitive Sciences, (3): Macaque Brain Development PI: Martin Styner & Marc Niethammer.

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Motivation Casey, B.J. et al. TRENDS in Cognitive Sciences, (3):

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Motivation Casey, B.J. et al. TRENDS in Cognitive Sciences, (3):

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL (e) Functional Analysis of Diffusion Tensor Tract Statistics Data Diffusion properties (e.g., FA, RA) Grids Covariates (e.g., age, gender, diagnostic)

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL FADTTS

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Multivariate Varying Coefficient Model Low Frequency Signal High Frequency Noise Varying Coefficients Decomposition: Covariance operator:

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Weighted Least Squares Estimate Low Frequency SignalKey Advantage

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Smooth individual functions Functional Principal Component Analysis Estimated covariance operator Estimated eigenfunctions

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Statistical Inferences Testing Linear Hypotheses Local Test Statistics Global Test Statistics Grid Point Whole Tract

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Asymptotics Confidence Band Confidence band Critical point

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Pros Directly smooth varying coefficient functions Explicitly account for functional nature of tract statistics Characterize low frequency signal Drop high frequency noise Increase statistical power Cons Complicated asymptotic results Computationally intensive Comparisons

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Simulation Studies Model Setting

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Simulation Studies Testing

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Power Comparison between GLM and FADTTS

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Real Data Analysis Casey, B.J. et al. TRENDS in Cognitive Sciences, (3): Early Brain Development

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Real Data Analysis 128 subjects Splenium Diffusion properties = Gender + Gestational age

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Real Data Analysis

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Local P-values

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Confidence Bands FA MD GenderAgeIntercept

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Functional Principal Component Analysis FA MD Eigenvalues

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL FADTTS GUI Toolbox

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL FADTTS GUI Toolbox Input: Raw data and test data. Raw data include tract data, design data and diffusion data. Test data include test matrix and vector. All data is in.mat format. Output: Basic plots and P-value plots Basic plots include diffusion plot, coefficient plot, eigenvalue and eigenfunction plot, confidence band plot. P-value plot include local p-value (in –log10 scale) plot with global p-value. Download: FADTTS GUI Toolbox with related documents and sample data is free to download from

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Summary From the statistical end, we have developed a new functional analysis pipeline for delineating the structure of the variability of multiple diffusion properties along major white matter fiber bundles and their association with a set of covariates of interest. From the application end, FADTTS is demonstrated in a clinical study of neurodevelopment for revealing the complex inhomogeneous spatiotemporal maturation patterns as the apparent changes in fiber bundle diffusion properties. We developed a GUI Tool box to facilitate the application of FADTTS.

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Future Research extend FADTTS to the analysis of high angular resolution diffusion image (HARDI). extend FADTTS to principal directions and full diffusion tensors on fiber bundles. extend to more complex fiber structures, such as the medial manifolds of fiber tracts. extend FADTTS to longitudinal studies and family studies.

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL References Zhu, H.T., Kong, L.L., Li, R.Z., Styner, M., Gerig, G., Lin, W.L., Gilmore, J. H. (2011). FADTTS: Functional Analysis of Diffiusion Tensor Tract Statistics varying coefficient models for DTI tract statistics. Neuroimage, in press. Zhu, H.T., Li, R. Z., Kong, L.L. (2011). Multivariate varying coefficient models for functional responses. Submitted. Zhu, H., Styner, M., Li, Y., Kong, L., Shi, Y., Lin, W., Coe, C., and Gilmore, J. (2010). Multivariate varying coefficient models for DTI tract statistics. In Jiang, T., Navab, N., Pluim, J., and Viergever, M., editors, Medical Image Computing and Computer-Assisted Intervention MICCAI 2010, volume 6361 of Lecture Notes in Computer Science, pages Springer Berlin / Heidelberg. NICTR Toolbox (2011). FADTTS: Functional Analysis of Diffusion Tensor Tract Statistics.