Lecture 3 Implications & extensions. Mass & energy balance The standard DEB model specifies fluxes of 4 organic compounds food, faeces, structure (growth),

Slides:



Advertisements
Similar presentations
Metabolic Programming of Zebrafish, Danio rerio Physiological performance as explained by Dynamic Energy Budget Theory and life-cycle consequences of uranium.
Advertisements

DEB applications from eco- toxicity to fisheries and beyond Bas Kooijman Dept theoretical biology VU University Amsterdam
The energetics of maturation Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Amsterdam 2012/04/23.
 Dynamic Energy Budget Theory Tânia Sousa with contributions from :Bas Kooijman.
Infer Why might sexual reproduction, as opposed to asexual reproduction, produce a population better able to survive disease or environmental changes.
Laure Pecquerie Laboratoire des Sciences de l’Environnement Marin UMR LEMAR, IRD 21 st -22 nd April 2015, DEB Course 2015, Marseille.
Mass balance 4.3 minerals carbon dioxide water dioxygen nitrogen-waste organics food structure reserve product flux of compound i chemical index for element.
Scaling relationships based on partition coefficients & body size have similarities & interactions Bas Kooijman Dept theoretical biology Vrije Universiteit.
Dynamic Energy Budgets i.r.t. population effects of toxicants Tjalling Jager Dept. Theoretical Biology.
Mechanistic modeling of zebrafish metabolism in relationship to food level and the presence of a toxicant (uranium) S. Augustine B.Gagnaire C. Adam-Guillermin.
Dynamic Energy Budget (DEB) theory by Elke, Svenja and Ben.
Energetics & Stoichiometry of plankton production Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Introduction to DEB theory Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Oslo 2012/02/09-10.
Tjalling Jager Dept. Theoretical Biology How to simplify biology to interpret effects of stressors.
The application of DEB theory to fish energetics Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
1-  maturity maintenance maturity offspring maturation reproduction Basic DEB scheme foodfaeces assimilation reserve feeding defecation structure somatic.
Estimation of DEB parameters Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Lecture 3 Implications of theory. Mass & energy balance The standard DEB model specifies fluxes of 4 organic compounds food, faeces, stucture (growth),
Lecture 4 Covariation of parameter values. Scales of life 8a Life span 10 log a Volume 10 log m 3 earth whale bacterium water molecule life on earth whale.
Dynamische Energie Budget theorie Bas Kooijman Afd Theoretische Biologie Vrije Universiteit Amsterdam
Chemical (and other) stress in DEB 3: the ‘target site’ and effects on survival Tjalling Jager Dept. Theoretical Biology TexPoint fonts used in EMF. Read.
DEB theory as framework for quantifying effects of noise on cetaceans Bas Kooijman Dept Theoretical Biology Washington, 2004/03/05.
Covariation & estimation of pars intro to practical part of DEB course 2011 Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Estimation of DEB parameters Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Current research on DEB theory Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Introduction to DEB theory & applications in fishery sciences
DEB-based body mass spectra
1-  maturity maintenance maturity offspring maturation reproduction Basic DEB scheme foodfaeces assimilation reserve feeding defecation structure somatic.
Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam The dynamics of isotopes.
Modelkey: VUA-TB, WP Effect-3 Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Life history events.
Application of DEB theory to a particular organism in (hopefully somewhat) practical terms Laure Pecquerie University of California Santa Barbara.
Dynamic Energy Budget theory 1 Basic Concepts 2 Standard DEB model 3 Metabolism 4 Univariate DEB models 5 Multivariate DEB models 6 Effects of compounds.
Standard DEB model summary of tele-part of DEB course 2011 Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam DEB theory & ecotox.
Lecture 2 Standard DEB model. 1-  maturity maintenance maturity offspring maturation reproduction Standard DEB model foodfaeces assimilation reserve.
DEB theory, an introduction Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Introduction to DEB theory Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
DEB theory, an introduction Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
1-  maturity maintenance maturity offspring maturation reproduction Standard DEB model foodfaeces assimilation reserve feeding defecation structure somatic.
From developmental energetics to effects of toxicants: a story born of zebrafish and uranium S. Augustine B.Gagnaire C. Adam-Guillermin S. A. L. M. Kooijman.
Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam What the egg can tell.
Links between aging & energetics Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Rostock, 2004/10/28.
Dynamic Energy Budget Theory - V Tânia Sousa with contributions from :Bas Kooijman with contributions from :Bas Kooijman.
Dynamic Energy Budget theory 1 Basic Concepts 2 Standard DEB modelStandard DEB model 3 Metabolism 4 Univariate DEB models 5 Multivariate DEB models 6 Effects.
Evolution of Aging and Other Life History Characteristics Chapter 13 1)Life history, energy allocation, and trade-offs 2)What is the Rate-of-Living Theory.
Theoretical Ecology course 2015 DEB theory Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Lecture 2 Outline of basic theory. 1-  maturity maintenance maturity offspring maturation reproduction Standard DEB model foodfaeces assimilation reserve.
What is DEB theory? Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Melbourne 2012/08/06.
DEB course 2013 summary of tele-part Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Texel 2013/04/15.
Metabolic dynamics acceleration during the life cycle of an individual Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam
Mass aspects & scaling Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Melbourne 2012/08/06 Contents.
Dina Lika Dept of Biology TexPoint fonts used in EMF. Read the TexPoint manual before you delete this box.: AAA The covariation method of estimation Add_my_pet.
 Dynamic Energy Budget Theory - I Tânia Sousa with contributions from :Bas Kooijman.
 Dynamic Energy Budget Theory - I Tânia Sousa with contributions from :Bas Kooijman.
Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Add_my_pet a data and.
Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Estimating DEB parameters.
Growth and Development. Growth It is a process involving cell division and cell enlargement. Cell divisions (Mitosis or Meiosis) is process which leads.
Dina Lika Dept of Biology TexPoint fonts used in EMF. Read the TexPoint manual before you delete this box.: AAA Covariation of parameter values UNIVERSITY.
 Dynamic Energy Budget Theory Tânia Sousa with contributions from : Gonçalo Marques and Bas Kooijman.
Dynamic energy budgets in individual based population models
Romain Richard André de Roos
Accelerations and the evolution of acceleration
Theoretical Ecology course 2012 DEB theory
From embryo to senescence with DEB theory for metab org
Scope for quantitative bioeconomics
The scaling of metabolism in the perspective of DEB theory
Models in stress research
REPRODUCTION IN ANIMALS
Accelerations and the evolution of acceleration
Presentation transcript:

Lecture 3 Implications & extensions

Mass & energy balance The standard DEB model specifies fluxes of 4 organic compounds food, faeces, structure (growth), reserve (including reproduction) The fluxes of 4 mineral compounds (CO 2, H 2 O, O 2, NH 3 ) follow from conservation of chemical elements C, H, O, N and strong homeostasis The standard DEB model assumes that only food is limiting Dissipating heat follows from conservation of energy and strong homeostasis (constant chemical potentials)

Method of indirect calorimetry Empirical origin (multiple regression): Lavoisier 1780 Heat production = w C CO 2 -production + w O O 2 -consumption + w N N-waste production DEB-explanation: Mass and heat fluxes = w A assimilation + w D dissipation + w G growth Applies to CO 2, O 2, N-waste, heat, food, faeces, … For V1-morphs: dissipation  maintenance

Mass fluxes  flux notice small dent due to transition maturation  reproduction At abundant food: growth ceases at l = 1 allocation to reproduction use of reserve not balanced by feeding in embryo

Diapauze 2.6.2c seeds of heather Calluna vulgaris can germinate after 100 year

Foetal development weight, g time, d Mus musculus Foetus develops like egg but rate not restricted by reserve (because supply during development) Initiation of development can be delayed by implantation egg cell Nutritional condition of mother only affects foetus in extreme situations Data: MacDowell et al 1927

Egg-foetus transitions in Poeciliopsis P. elongata P. fasciata P. turrubarensis 1.1.4J, cont 2

Dynamic mixtures of V0- & V1-morphs V1-morph V0-morph Respiration: assim + maint + growth Assim, maint  mass Growth in diam  time at constant food

White et al 2011 Am. Nat., 178: Dynamic mixtures of V0- & V1-morphs 0.5 cm/yr cm/yr cm/yr cm/yr cm/yr cm/yr Celleporella

Dynamic mixtures of V0- & V1-morphs Celleporella 0.5 cm/yr , 24 cm/yr White et al 2011 Am. Nat., 178:

Acceleration of development Embryo: isomorphic v constant Early juvenile: V1-morphic v, {p Am } increase with length Late juvenile/adult: isomorphic v, {p Am } constant Found in: bivalves, gastropods, copepods, amphipods, decapods, collembolas, echinoderms, lancelets, tunas, flatfish, anchovy, Danio, caecilians, marsupials

Anchovy Engraulis encrasicolus time, d length, cm 0.16 cm 0.22 cm 0.4 cm 0.9 cm 1.2 cm >4 cm embryo Pecquerie 2008 PhD thesis VU A’dam

Stage transitions at maturity thresholds Danio rerio 28.5°C Augustine et al 2011 Comp. Biochem. Physiol. A 159 :275– a

Stage transitions at maturity thresholds Augustine et al 2011 Comp. Biochem. Physiol. A 159 :275–283 Danio rerio 28.5°C Data: Lauwrence et al 2008 caloric restiction Data: Augustine < birth : isomorph birth-metamorphosis: V1-morph > metamorphosis : isomorph 7.8.2b

Acceleration of development 7.8.2c indirect direct acceleration development no yes Pseudophryne bibronii Geocrinia vitellina Crinia georgiana Crinia nimbus

Acceleration of development 7.8.2d O 2 nmol/h Dry mass, mg Crinia georgiana Pseudophryne bibronii age, d hatch birth Mueller et al 2011, subm max dry weight 500 mg max dry weight 200 mg 12 °C 1 0 ½ ¾ ¼  1 0 ½ ¾ ¼ metam

Aging 6.1g

Aging: relation to O 2 -use 6.1h, time, d survival prob Reodruction rate, #/d Data: Ernsting & Isaaks high food 10/20°C high food 10/10°C low food 10/20°C Differences in life span are caused by differences in respiration Survival in adult Notiophilus biguttatus modified by food and temperature

Aging: sex differentiation 6.1i time, d survival prob body length, mm Data on Daphnia magna: MacArthur & Baillie 1929 Differences in aging between sexes are caused by differences in g

Aging: endotherms & feeding 6.1l time, d survival probability embryo weight, g body weight, g Mus musculus data: Weindruch et al 1986, MacDowell et al 1927 feeding level Life span hardly depends on food in ecotherms decreases for increasing food in endotherms Van Leeuwen et al 2002 Biogerontology 3:

Aging & Energetics 6.1m Olm Proteus anguinus: a † > 100 a a b = 140 d, a p = 14 a, R = 35/12.5 a -1 Can live 10 months without food, so can switch to torpor state Voituron et al 2010 Biol. Lett.

Aging 6.1.1

Aging module of DEB theory 6.1.1a

Aging: non-growing ectotherms 6.1.1b time, d survival probability Data: Rose 1984 Weibull with shape parameter 3

Aging in adult insects age after eclosion, d surviving number # of eggs/beetle, d -1 Drosophila melanogaster Notiophilus biguttatus Data: Rose 1984 Data: Ernsting & Isaaks, 1991 High food, 20/10 °C 0.63 a -2 High food, 10 °C a -2 Low food, 20/10 °C a -2 survival based on observed reproduction No growth initial random mort Weibull Model  =3

General Weibull fits DEB 6.1.1c Data from Elandt-Johnson & Johnson 1980 for white USA males in the period Both models are fitted to the same data They fit equally well and have both 4 parameters Contrary to the Weibull model the DEB model - is based on tested assumptions - has links with energetics via h W and h G.

Aging: growing ectotherms 6.1.1d time, d survival prob body weight, g Data: Slob & Janse 1988 Weibull with shape 3 fits ectothermic survival well, even if growth period not small relative to life span

Aging: Function Observation: Aging related hazard rate remains low during embryonic and juvenile stages becomes high at start of reproduction Suggestion: Organisms decrease protection level in adult stage use ROS to create genetic diversity among gametes use genetic diversity for adaptation to changing environment efficient defence (peroxidase dismutase) or repair systems or reduced ROS production can increase life span, but reduce genome diversity