SpHPP Bioinformatics. 3 rd CHr-16 Workshop. Miraflores de la Sierra December, 10 th -11 th 2012 Alberto Medina

Summary 1.Logistics 2.Activities and meetings 3.Data Analysis pipeline 1.Shotgun 2.MRM 4.Sharing data 5.Viewing data 6.Conclusions

Summary 1.Logistics 2.Activities and meetings 3.Data Analysis pipeline 1.Shotgun 2.MRM 4.Sharing data 5.Viewing data 6.Conclusions

Logistics Logistics: FTP. Public FTP for exchanging “regular” files. A new system should be developed for high throughput instruments. Mailing list. Different lists grouping by working groups Wiki space: Web site: Google code site: Webex teleconference

Website (

Website. Consortium introduction

Website. WG introduction

Website. BD page

Website CHPP

C-HPP Wiki

Summary 1.Logistics 2.Activities and meetings 3.Data Analysis pipeline 1.Shotgun 2.MRM 4.Sharing data 5.Viewing data 6.Conclusions

Activities and metings 9/3rd: Follow-up teleconference. 9/19th: Follow-up teleconference. 10/3rd: Follow-up teleconference. 10/17th: Follow-up teleconference. 10/31st: Follow-up teleconference. 11/21st: Follow-up teleconference.

Summary 1.Logistics 2.Activities and meetings 3.Data Analysis pipeline 1.Shotgun 2.MRM 4.Sharing data 5.Viewing data 6.Conclusions

Summary 1.Logistics 2.Activities and meetings 3.Data Analysis pipeline 1.Shotgun 2.MRM 4.Sharing data 5.Viewing data 6.Conclusions

Data Analysis Pipeline. Shotgun

We are growing!

Main improvements Some bugs have been fixed Data Analysis could be directly done by end-users Sequest has been included. Protein Inference – Protein Grouping.

Data Analysis. Protein Grouping

Main improvements Some bugs have been fixed Data Analysis could be directly done by end-users Sequest has been included. Protein Inference – Protein Grouping. Mascot Server Curated experiments

Summary 1.Logistics 2.Activities and meetings 3.Data Analysis pipeline 1.Shotgun 2.MRM 4.Sharing data 5.Viewing data 6.Conclusions

Data Analysis. MRM

Data Analysis. Proteotipic?

Summary 1.Logistics 2.Activities and meetings 3.Data Analysis pipeline 1.Shotgun 2.MRM 4.Sharing data 5.Viewing data 6.Conclusions

Sharing Data

Summary 1.Logistics 2.Activities and meetings 3.Data Analysis pipeline 1.Shotgun 2.MRM 4.Sharing data 5.Viewing data 6.Conclusions

Public Data

Viewing Data

Viewing other “data”

Summary 1.Logistics 2.Activities and meetings 3.Data Analysis pipeline 1.Shotgun 2.MRM 4.Sharing data 5.Viewing data 6.Conclusions

Conclusions Website should be filled. WG description ASAP. Continuous activities and meetings. Data Analysis. Shotgun analysis is great! MRM DB Data submission pipeline. Sequest is “active”. Interaction with C-HPP and other chromosomes (TPB).

Acknowledges CIMA: Victor Segura Fernando Corrales UCM: Vital Vialas IIBB/CSIC: Óscar Gallardo Ibermática Aitor Moreno UPV: Gorka Prieto Kerman Aloria. Jesús M. Arizmendi. UV: Manuel S. Pino Javi Órtiz CNB/CSIC: Salvador Martínez de Bartolomé. Juan Pablo Albar

Discussion Submission pipeline. Protein Inference. Resubmit the data. Sequence BDs. MRM queries. Logo and name.