HST:583 fMRI Acquisition Lab1 Susan Whitfield-Gabrieli TASKS: Self Reference Sensorimotor Breath holding Sternberg Self ReferenceSternberg Breath holding.

Slides:



Advertisements
Similar presentations
Figure Three-dimensional reconstruction of the left hemisphere of the human brain showing increased activity in ventrolateral area 45 during verbal.
Advertisements

When zero is not zero: The problem of ambiguous baseline conditions in fMRI Stark & Squire (2001) By Mike Toulis November 12, 2002.
Detecting Conflict-Related Changes in the ACC Judy Savitskaya 1, Jack Grinband 1,3, Tor Wager 2, Vincent P. Ferrera 3, Joy Hirsch 1,3 1.Program for Imaging.
Section 1 fMRI for Newbies
Preoperative functional magnetic resonance imaging assessment of higher-order cognitive function in patients undergoing surgery for brain tumors C. Amiez,
Results Animals with recognition displayed increased BDNF in the iTC, CA1 of the hippocampus, the diagonal band, basolateral amygdala and the anterior.
Susceptibility Induced Loss of Signal: Comparing PET and fMRI on a Semantic Task Devlin et al. (in press)
Figure 2 shows between-group connectivity when the seed is the amygdala. Ayahuasca users show greater connectivity based from the amygdala. The connectivity.
Comparative Diffusion Tensor Imaging (DTI) Study of Tool Use Pathways in Humans, Apes and Monkeys Ashwin G. Ramayya 1,2, Matthew F. Glasser 1, David A.
Daily fMRI Practice John Li MD 9/27/2012. When you preparing a fMRI study, you need to Read and understand the fMRI requirements. Design and choose proper.
Studying Memory Encoding with fMRI Event-related vs. Blocked Designs Aneta Kielar.
Cognitive Challenge Summary Analysis of Phase II data –240 sessions analyzed using BPutil pipeline, BIRN QA and Eventstats –ROI analysis of MFG, IPL, and.
Acute effects of alcohol on neural correlates of episodic memory encoding Hedvig Söderlund, Cheryl L. Grady, Craig Easdon and Endel Tulving Sundeep Bhullar.
INTRODUCTION ADULT AGE DIFFERENCES IN THE HEMODYNAMIC RESPONSE DURING VISUAL TARGET DETECTION MEASURED BY FUNCTIONAL MRI David J. Madden 1, Scott A. Huettel.
Biomedical Informatics Research Network Gregory G. Brown, Shaunna Morris, and Amanda Bischoff Grethe, VASDHS and University of California, San Diego Proportional.
RIGHT PARIETAL CORTEX PLAYS A CRITICAL ROLE IN CHANGE BLINDNESS by Naser Aljundi.
Orienting Attention to Semantic Categories T Cristescu, JT Devlin, AC Nobre Dept. Experimental Psychology and FMRIB Centre, University of Oxford, Oxford,
Robert W. McCarley, Presenter Cindy Wible, Marek Kubicki ( generated fMRI data), and Dean Salisbury (generated ERP data) Harvard, VA Boston Healthcare.
First BIRN Cognitive Challenge Group Boston All-Hands Meeting October 12, 2004.
Introduction  Recent neuroimaging studies of memory retrieval have reported the activation of a medial and left – lateralised memory network that includes.
Figure 1. Activations (P < 10−5) of the group (n = 8) in response to the stimulation of the five locations (scheme on the left) on the middle.
Volume 46, Issue 5, Pages (June 2005)
Volume 60, Issue 4, Pages (November 2008)
Volume 56, Issue 6, Pages (December 2007)
Volume 20, Issue 5, Pages (May 1998)
Lior Shmuelof, Ehud Zohary  Neuron 
Volume 87, Issue 4, Pages (August 2015)
Motor and Nonmotor Circuitry Activation Induced by Subthalamic Nucleus Deep Brain Stimulation in Patients With Parkinson Disease  Emily J. Knight, PhD,
Medial Prefrontal Cortex Predicts Internally Driven Strategy Shifts
Rachel Ludmer, Yadin Dudai, Nava Rubin  Neuron 
Michael S Beauchamp, Kathryn E Lee, Brenna D Argall, Alex Martin 
A Common Network of Functional Areas for Attention and Eye Movements
Top. Top. FMRI activation map for the tone decision–rest comparison. The data are presented as sequential sagittal sections from left to right, with the.
Sequential effects of propofol on functional brain activation induced by auditory language processing: an event-related functional magnetic resonance.
Frontal Cortex and the Discovery of Abstract Action Rules
Disruption of Large-Scale Brain Systems in Advanced Aging
Volume 27, Issue 2, Pages (January 2017)
Humor Modulates the Mesolimbic Reward Centers
Scale-Invariant Movement Encoding in the Human Motor System
Neural Correlates of Visual Working Memory
The Prefrontal Cortex—An Update
The Generality of Parietal Involvement in Visual Attention
Volume 26, Issue 7, Pages (April 2016)
Visual Cortex Extrastriate Body-Selective Area Activation in Congenitally Blind People “Seeing” by Using Sounds  Ella Striem-Amit, Amir Amedi  Current.
Volume 23, Issue 1, Pages (May 1999)
Medial Prefrontal and Subcortical Mechanisms Underlying the Acquisition of Motor and Cognitive Action Sequences in Humans  Etienne Koechlin, Adrian Danek,
Modality-Independent Coding of Spatial Layout in the Human Brain
Michael S Beauchamp, Kathryn E Lee, Brenna D Argall, Alex Martin 
Distributed Neural Systems for the Generation of Visual Images
Moral Judgments Recruit Domain-General Valuation Mechanisms to Integrate Representations of Probability and Magnitude  Amitai Shenhav, Joshua D. Greene 
Dharshan Kumaran, Eleanor A. Maguire  Neuron 
Lior Shmuelof, Ehud Zohary  Neuron 
Michael S. Beauchamp, Kathryn E. Lee, James V. Haxby, Alex Martin 
Parietal and Frontal Cortex Encode Stimulus-Specific Mnemonic Representations during Visual Working Memory  Edward F. Ester, Thomas C. Sprague, John T.
Neural Correlates of the Attentional Blink
Broca's Area and the Hierarchical Organization of Human Behavior
Cortical Motion Deafness
René Marois, Hoi-Chung Leung, John C. Gore  Neuron 
Michael A. Silver, Amitai Shenhav, Mark D'Esposito  Neuron 
Three-Dimensional Shape Representation in Monkey Cortex
Facial-Expression and Gaze-Selective Responses in the Monkey Amygdala
Michael S. Beauchamp, Kathryn E. Lee, James V. Haxby, Alex Martin 
Decoding Successive Computational Stages of Saliency Processing
Medial Prefrontal Cortex Predicts Internally Driven Strategy Shifts
Common Prefrontal Regions Coactivate with Dissociable Posterior Regions during Controlled Semantic and Phonological Tasks  Brian T Gold, Randy L Buckner 
Volume 50, Issue 4, Pages (May 2006)
Human Posterior Parietal Cortex Flexibly Determines Reference Frames for Reaching Based on Sensory Context  Pierre-Michel Bernier, Scott T. Grafton  Neuron 
César F. Lima, Saloni Krishnan, Sophie K. Scott 
Michael A. Silver, Amitai Shenhav, Mark D'Esposito  Neuron 
Volume 10, Issue 1, Pages (January 2000)
Presentation transcript:

HST:583 fMRI Acquisition Lab1 Susan Whitfield-Gabrieli TASKS: Self Reference Sensorimotor Breath holding Sternberg Self ReferenceSternberg Breath holding Sensorimotor

POLITE DARING RUDE Self Reference Task DEPENDABLE “Does this word apply to you?” (self reference condition) or “Is this word positive?” (semantic condition) Stimuli: Trait Adjectives Cue:

Self reference task design Stimuli: trait adjective words Words were drawn from Anderson’s (1968) list of normed trait adjectives. The lists were counterbalanced for word valence, length and number of syllables. Presentation: Words are presented in a blocked design. Each word is presented for 3 sec in blocks of ten and prior to each block onset subjects view a 2 sec cue describing their task for upcoming block. Each block is followed by 10 seconds of a rest condition. Each session has 2 blocks per self reference and 2 blocks per semantic conditions in the ABBA format. Total task time: 3min/session, 4 sessions or 12min

Schematic illustration of cortical midline structures (CMS) MOPFC= medial orbital prefrontal cortex (BA11, BA12) VMPFC = ventromedial prefrontal cortex (BA10, 11) PACC = pre and subgenual anterior cingulate cortex (BA24, BA25, BA32) SACC = supragenual anterior cingulate cortex (BA24, BA32) PCC = posterior cingulate cortex (BA23) Northoff Neuroimage 2006

Activation in CMS observed in imaging studies during self related tasks in different domains. Northoff Neuroimage 2006

Graphic representation of localizations of clusters Northoff Neuroimage

Self Reference, Single Subject (self-semantic)

Single subject (4 sessions)

Single subject, one session only

Single Subject Data

Self reference, Group Analysis

Frontal regions are prone to susceptibility artifact

Phase maps: The field map is a 2D gradient echo sequence which acquires an image at 2 different echo times. This sequence generates 2 types of images, a magnitude image and a phase map. The phase map represents the phase differences of the spins which ultimately represent the local field inhomogeneities. You can display this map to see which regions are prone to susceptibility artifacts.

The task consists of a block design with block durations of 16s on/off. When checkerboard appears, subjects presses button using their right index finger and the off-block is fixation/no tapping. There are 15 total, 16s blocks. (4 min) Sensorimotor Task On block parameters: ISI ranges from ms, average ISI = 762ms, std. dev = 156ms. 21 checkerboard flashes per on block, each checkerboard flash duration = 200ms. The sequence begins with an off block.Scanner triggers the paradigm (after the dummy scans). fBIRN ( functional biomedical informatics research network)

Motor and Visual Cortex Motor cortex - BA4 shown in green Visual cortex - BA 17,18,19 from rear view of brain BA 17 is shown in red. BA 18 is orange BA 19 is yellow Brain surface extracted from structural MRI data (Wellcome Dept. Imaging Neuroscience, UCL, UK). Brodmann Area data is based on information from the online Talairach demon (electronic version of Talairach and Tournoux, 1988). You’ll see LEFT motor cortex (green), since the subject is responding with the right hand, and you’ll see bilateral visual cortex.

Example of Sensorimotor Task activation (with visual, motor & auditory) fBIRN ( functional biomedical informatics research network) Gary Glover, Stanford University Note: This task has an additional auditory component so you see temporal lobe activation as well as motor and visual. In addition, the subject is responding with both hands so you see bilateral motor activation as opposed to only the left hemisphere motor (contralateral to response hand)

Breath Holding Task This is a calibration task to measure subjects' global vascular reactivity. The task consists of a block design with alternating on/off blocks of 16-second periods of breath holding and normal breathing. During the off-block, the subject sees a green screen during which they are to breathe normally. During the last 2s of the off-block, the screen becomes yellow, signifying to the subject to take a deep breath in and hold. During the on-block (16s), the subject is shown a red screen, during which time they should hold their breath. The subject resumes breathing when they see a green colored screen. 15 total 16s blocks (4 min) Total task time: 4:06

Breath holding calibration The entire gray matter volume is activated in each subject by the breath-holding task. This sample data is from Stanford’s 3T MRI shows the global response to holding one’s breath for 15 seconds.

Sternberg Item Recognition Paradigm (SIRP) A Working Memory Task Each block is composed of three epochs: learn, encode, and probe: 1.5 sec for the “learn” prompt followed by.5 sec blank screen 6 sec to encode the target digits ( [1, 3, 5] digit sets providing a range of task difficulty) 38 sec for the probe digits (sequential presentation of digits) This means each working memory set lasts a total of 46 seconds. A block of each set size occurs twice in random order within a single run and each working memory set is sandwiched between fixation blocks. The duration of the fixation blocks within a run is random: Total time for all fixation blocks within a run = 78 seconds, (4,20) (min time = 4 sec, max time = 20 sec) Total scan time is thus 46 seconds* seconds+ 6 sec ddas = 360s Total task time: 6:00minTime frames: 180

Sternberg Task: Group analysis (n=10) HIGH (5) – LOW(1) Working Memory Load: Green regions: ROIs of 3 working memory related areas (DLPFC, DLPMC, IPS) and 1 control region (MTG) DLPFC (dorsal lateral prefrontal cortex) DLPMC (dorsal lateral premotor cortex) IPS (intraparietal sulcus) MTG (middle temp gyrus) Stuart Wallace, MIND, BIRN